Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25] 128,401 sequences; 322,334,493 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1065 122 7e-22 seq55198 113 4e-19 seq4775 100 2e-15 seq7091 89.7 4e-12 >seq1065 Length=17194 Score = 122 bits (134), Expect = 7e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 550316 TTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCT 550375 ||| | || || |||| || || ||||| | || || ||||| | || ||| || Sbjct 10342 TTTACGCCGGAGGAAATCTCCTCGATGGTACTGATCAAGATGAAGGAGACGGCCGAGGCA 10401 Query 550376 TTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCA 550435 | | || | |||| | ||||||||| || || |||||||| || || || |||||| Sbjct 10402 TACTTGGGGCGCAAAGTGAAGGATGCAGTGATCACGGTACCAGCCTACTTCAACGACTCA 10461 Query 550436 CAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATC 550495 ||||| || ||||| |||||||| || || | || |||||||| || ||||| || Sbjct 10462 CAACGACAGGCTACCAAAGATGCGGGCGCAATCTCGGGCCTTAATGTGCTGCGTATCATA 10521 Query 550496 AATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAAA 550537 || ||||||||||| ||||| |||| |||||| | || ||| Sbjct 10522 AACGAACCTACTGCAGCTGCCATTGCGTATGGATTGGACAAA 10563 Score = 113 bits (124), Expect = 4e-19 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455 |||||| || | || || || |||||||| ||||| || || || || || || ||||| Sbjct 1473 GGATGCGGTGGTCACGGTGCCGGCATATTTCAATGATTCCCAGCGGCAGGCAACGAAAGA 1532 Query 550456 TGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515 |||||| ||||| || || ||||| || || ||||| ||||| || ||||||||||| Sbjct 1533 TGCTGGCGCAATTGCGGGCCTAAATGTGCTGCGAATTATAAATGAGCCAACTGCTGCTGC 1592 Query 550516 ACTTGCATATGGACTTGATAAA 550537 | |||||||||| | |||||| Sbjct 1593 AATTGCATATGGTTTGGATAAA 1614 Score = 89.7 bits (98), Expect = 4e-12 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566 || ||||| || || ||||| || |||||||| ||||| ||||| ||||||||||||||| Sbjct 4026 GGCATTCCGCCGGCACCTCGCGGTGTACCGCAGATTGAGGTTACATTCGATATCGATGCC 4085 Query 552567 AATGGAATTTTGAATGTGACTGCTTGTGATAAATCTAGCAACAAGAGTAAAAATATTAC 552625 |||||||| |||| || || || ||||| || | | |||| || || ||||| Sbjct 4086 AATGGAATCCTGAACGTTACGGCGCAAGATAAGTCCACCGGCAAGCACAATAAGATTAC 4144 >seq55198 Length=1598 Score = 113 bits (124), Expect = 4e-19 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 550316 TTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCT 550375 ||| | || ||| |||||||| | |||||||||| ||||||||| ||| || || Sbjct 1254 TTTGCCCCGGAAGAAATTTCAGCGATGGTTTTAACGAAAATGAAGGAAATCGCAGAGGCA 1313 Query 550376 TTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCA 550435 | | |||| || | || | || || || || || || || || |||| ||| | Sbjct 1314 TATATTGGGAAAAAGGTGGAACACGCTGTGATCACAGTGCCGGCTTACTTTACTGATGCG 1373 Query 550436 CAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATC 550495 ||||| || ||||| || ||||||||| || || || || |||||| | ||||||||| Sbjct 1374 CAACGGCAGGCTACGAAGGATGCTGGAACGATCGCCGGCCTAAATGTTGTCCGTATTATC 1433 Query 550496 AATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAAA 550537 || ||||| || || || || | || ||||| || |||||| Sbjct 1434 AACGAACCAACGGCCGCCGCTATCGCTTATGGTCTAGATAAA 1475 Score = 91.5 bits (100), Expect = 1e-12 Identities = 165/240 (69%), Gaps = 6/240 (3%) Strand=Plus/Plus Query 550022 AGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAAC 550081 |||||||||||| | | ||||||| || |||||||| |||||||| || || || Sbjct 628 AGTTGTGTTGGTATCTATAAAAATGGACGTGTGGAAATTATCGCCAATGAACAGGGCAAT 687 Query 550082 AGAACTACTCCATCTTATGTTTCTTTCACG---GAAACTG---AACATTTAGTTGGTGAT 550135 ||| || || || || || | |||| || ||| | | | | |||||||| Sbjct 688 CGAATCACACCGTCGTACGTGGCGTTCAGTAGTGAGTCTGGTGAGCGTCTGATTGGTGAT 747 Query 550136 GCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTA 550195 ||||| ||| | || ||| ||||| | ||||| |||| ||||| || ||||| Sbjct 748 GCAGCCAAAAACCAGCTCACCACAAATCCGAAAAATACCGTTTTCGATGCGAAGCGTTTG 807 Query 550196 ATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAA 550255 ||||| || ||||||| ||| | ||||| | ||| ||| |||| ||||| ||| || Sbjct 808 ATTGGCCGAGGTTTTAACGATACCACTGTGAAAAAAGACATGGAGCACTGGCCATTCGAA 867 >seq4775 Length=9739 Score = 100 bits (110), Expect = 2e-15 Identities = 159/225 (71%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 550316 TTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCT 550375 ||| | || || |||||||| | ||||| |||| ||||||||| ||| || || Sbjct 345 TTTGCCCCGGAGGAAATTTCAGCGATGGTCTTAACGAAAATGAAGGAAATCGCAGAAGCA 286 Query 550376 TTTGTTGGTCAAGAAGTTACGGAT---GCAGTAATAACTGTACCAGCATATTTTAATGAC 550432 | | | || |||||| | ||| || || || || || || ||||| |||| ||| Sbjct 285 TATATCGGG-AAGAAGGT--GGAACACGCCGTGATCACAGTGCCGGCATACTTTACTGAT 229 Query 550433 TCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATT 550492 | ||||| || ||||| || ||||||||| || || || || || ||| | |||||| Sbjct 228 GCGCAACGGCAGGCTACGAAGGATGCTGGAACGATCGCCGGCCTAAACGTTGTCCGTATT 169 Query 550493 ATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAAA 550537 ||||| ||||| || || || || | || ||||| || |||||| Sbjct 168 ATCAACGAACCAACGGCCGCCGCTATCGCTTATGGTCTAGATAAA 124 Score = 96.9 bits (106), Expect = 3e-14 Identities = 168/243 (69%), Gaps = 6/243 (2%) Strand=Plus/Minus Query 550019 TATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGT 550078 || |||||||||||| | | ||||||| || |||||||| |||||||| || || Sbjct 979 TACAGTTGTGTTGGTATCTATAAAAATGGACGTGTGGAAATTATCGCCAATGAACAGGGC 920 Query 550079 AACAGAACTACTCCATCTTATGTTTCTTTCACG---GAAACTG---AACATTTAGTTGGT 550132 || | | || ||||| || || | |||| || ||| | | | | ||||| Sbjct 919 AATCGTATCACACCATCGTACGTGGCGTTCAGTAGTGAGTCTGGTGAGCGTCTGATTGGT 860 Query 550133 GATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGT 550192 |||||||| ||| | || ||| ||||| | ||||| | || ||||| |||||| Sbjct 859 GATGCAGCCAAAAACCAGCTCACCACAAATCCGAAAAATACCGTATTCGATGCGAAACGT 800 Query 550193 TTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTC 550252 || ||||| || ||||||| ||| | ||||| | ||||||| |||| ||||| ||| Sbjct 799 TTGATTGGCCGAGGTTTTAACGATACCACTGTGAAAAAAGATATGGAGCACTGGCCATTC 740 Query 550253 CAA 550255 || Sbjct 739 GAA 737 >seq7091 Length=8065 Score = 89.7 bits (98), Expect = 4e-12 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 394075 ATTTGGATCCGAGGTAATAACTGTACGACCTGACATATCCACACGTTTTCCCATAAGATT 394134 ||||||||||| ||||||||||| ||| |||| | |||||| ||||| ||||| | ||| Sbjct 786 ATTTGGATCCGGTGTAATAACTGTTCGAGCTGAGAAATCCACTCGTTTACCCATCAAATT 845 Query 394135 TCCACGAATTCTACCTTCTTTACC 394158 ||||||||||| ||||| || || Sbjct 846 TCCACGAATTCGGCCTTCCTTCCC 869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4022505576031490