Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25]
128,401 sequences; 322,334,493 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq1065 122 7e-22
seq55198 113 4e-19
seq4775 100 2e-15
seq7091 89.7 4e-12
>seq1065
Length=17194
Score = 122 bits (134), Expect = 7e-22
Identities = 160/222 (72%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 550316 TTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCT 550375
||| | || || |||| || || ||||| | || || ||||| | || ||| ||
Sbjct 10342 TTTACGCCGGAGGAAATCTCCTCGATGGTACTGATCAAGATGAAGGAGACGGCCGAGGCA 10401
Query 550376 TTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCA 550435
| | || | |||| | ||||||||| || || |||||||| || || || ||||||
Sbjct 10402 TACTTGGGGCGCAAAGTGAAGGATGCAGTGATCACGGTACCAGCCTACTTCAACGACTCA 10461
Query 550436 CAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATC 550495
||||| || ||||| |||||||| || || | || |||||||| || ||||| ||
Sbjct 10462 CAACGACAGGCTACCAAAGATGCGGGCGCAATCTCGGGCCTTAATGTGCTGCGTATCATA 10521
Query 550496 AATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAAA 550537
|| ||||||||||| ||||| |||| |||||| | || |||
Sbjct 10522 AACGAACCTACTGCAGCTGCCATTGCGTATGGATTGGACAAA 10563
Score = 113 bits (124), Expect = 4e-19
Identities = 110/142 (77%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455
|||||| || | || || || |||||||| ||||| || || || || || || |||||
Sbjct 1473 GGATGCGGTGGTCACGGTGCCGGCATATTTCAATGATTCCCAGCGGCAGGCAACGAAAGA 1532
Query 550456 TGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515
|||||| ||||| || || ||||| || || ||||| ||||| || |||||||||||
Sbjct 1533 TGCTGGCGCAATTGCGGGCCTAAATGTGCTGCGAATTATAAATGAGCCAACTGCTGCTGC 1592
Query 550516 ACTTGCATATGGACTTGATAAA 550537
| |||||||||| | ||||||
Sbjct 1593 AATTGCATATGGTTTGGATAAA 1614
Score = 89.7 bits (98), Expect = 4e-12
Identities = 91/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566
|| ||||| || || ||||| || |||||||| ||||| ||||| |||||||||||||||
Sbjct 4026 GGCATTCCGCCGGCACCTCGCGGTGTACCGCAGATTGAGGTTACATTCGATATCGATGCC 4085
Query 552567 AATGGAATTTTGAATGTGACTGCTTGTGATAAATCTAGCAACAAGAGTAAAAATATTAC 552625
|||||||| |||| || || || ||||| || | | |||| || || |||||
Sbjct 4086 AATGGAATCCTGAACGTTACGGCGCAAGATAAGTCCACCGGCAAGCACAATAAGATTAC 4144
>seq55198
Length=1598
Score = 113 bits (124), Expect = 4e-19
Identities = 158/222 (71%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 550316 TTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCT 550375
||| | || ||| |||||||| | |||||||||| ||||||||| ||| || ||
Sbjct 1254 TTTGCCCCGGAAGAAATTTCAGCGATGGTTTTAACGAAAATGAAGGAAATCGCAGAGGCA 1313
Query 550376 TTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCA 550435
| | |||| || | || | || || || || || || || || |||| ||| |
Sbjct 1314 TATATTGGGAAAAAGGTGGAACACGCTGTGATCACAGTGCCGGCTTACTTTACTGATGCG 1373
Query 550436 CAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATC 550495
||||| || ||||| || ||||||||| || || || || |||||| | |||||||||
Sbjct 1374 CAACGGCAGGCTACGAAGGATGCTGGAACGATCGCCGGCCTAAATGTTGTCCGTATTATC 1433
Query 550496 AATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAAA 550537
|| ||||| || || || || | || ||||| || ||||||
Sbjct 1434 AACGAACCAACGGCCGCCGCTATCGCTTATGGTCTAGATAAA 1475
Score = 91.5 bits (100), Expect = 1e-12
Identities = 165/240 (69%), Gaps = 6/240 (3%)
Strand=Plus/Plus
Query 550022 AGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAAC 550081
|||||||||||| | | ||||||| || |||||||| |||||||| || || ||
Sbjct 628 AGTTGTGTTGGTATCTATAAAAATGGACGTGTGGAAATTATCGCCAATGAACAGGGCAAT 687
Query 550082 AGAACTACTCCATCTTATGTTTCTTTCACG---GAAACTG---AACATTTAGTTGGTGAT 550135
||| || || || || || | |||| || ||| | | | | ||||||||
Sbjct 688 CGAATCACACCGTCGTACGTGGCGTTCAGTAGTGAGTCTGGTGAGCGTCTGATTGGTGAT 747
Query 550136 GCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTA 550195
||||| ||| | || ||| ||||| | ||||| |||| ||||| || |||||
Sbjct 748 GCAGCCAAAAACCAGCTCACCACAAATCCGAAAAATACCGTTTTCGATGCGAAGCGTTTG 807
Query 550196 ATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAA 550255
||||| || ||||||| ||| | ||||| | ||| ||| |||| ||||| ||| ||
Sbjct 808 ATTGGCCGAGGTTTTAACGATACCACTGTGAAAAAAGACATGGAGCACTGGCCATTCGAA 867
>seq4775
Length=9739
Score = 100 bits (110), Expect = 2e-15
Identities = 159/225 (71%), Gaps = 6/225 (3%)
Strand=Plus/Minus
Query 550316 TTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCT 550375
||| | || || |||||||| | ||||| |||| ||||||||| ||| || ||
Sbjct 345 TTTGCCCCGGAGGAAATTTCAGCGATGGTCTTAACGAAAATGAAGGAAATCGCAGAAGCA 286
Query 550376 TTTGTTGGTCAAGAAGTTACGGAT---GCAGTAATAACTGTACCAGCATATTTTAATGAC 550432
| | | || |||||| | ||| || || || || || || ||||| |||| |||
Sbjct 285 TATATCGGG-AAGAAGGT--GGAACACGCCGTGATCACAGTGCCGGCATACTTTACTGAT 229
Query 550433 TCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATT 550492
| ||||| || ||||| || ||||||||| || || || || || ||| | ||||||
Sbjct 228 GCGCAACGGCAGGCTACGAAGGATGCTGGAACGATCGCCGGCCTAAACGTTGTCCGTATT 169
Query 550493 ATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAAA 550537
||||| ||||| || || || || | || ||||| || ||||||
Sbjct 168 ATCAACGAACCAACGGCCGCCGCTATCGCTTATGGTCTAGATAAA 124
Score = 96.9 bits (106), Expect = 3e-14
Identities = 168/243 (69%), Gaps = 6/243 (2%)
Strand=Plus/Minus
Query 550019 TATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGT 550078
|| |||||||||||| | | ||||||| || |||||||| |||||||| || ||
Sbjct 979 TACAGTTGTGTTGGTATCTATAAAAATGGACGTGTGGAAATTATCGCCAATGAACAGGGC 920
Query 550079 AACAGAACTACTCCATCTTATGTTTCTTTCACG---GAAACTG---AACATTTAGTTGGT 550132
|| | | || ||||| || || | |||| || ||| | | | | |||||
Sbjct 919 AATCGTATCACACCATCGTACGTGGCGTTCAGTAGTGAGTCTGGTGAGCGTCTGATTGGT 860
Query 550133 GATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGT 550192
|||||||| ||| | || ||| ||||| | ||||| | || ||||| ||||||
Sbjct 859 GATGCAGCCAAAAACCAGCTCACCACAAATCCGAAAAATACCGTATTCGATGCGAAACGT 800
Query 550193 TTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTC 550252
|| ||||| || ||||||| ||| | ||||| | ||||||| |||| ||||| |||
Sbjct 799 TTGATTGGCCGAGGTTTTAACGATACCACTGTGAAAAAAGATATGGAGCACTGGCCATTC 740
Query 550253 CAA 550255
||
Sbjct 739 GAA 737
>seq7091
Length=8065
Score = 89.7 bits (98), Expect = 4e-12
Identities = 70/84 (83%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 394075 ATTTGGATCCGAGGTAATAACTGTACGACCTGACATATCCACACGTTTTCCCATAAGATT 394134
||||||||||| ||||||||||| ||| |||| | |||||| ||||| ||||| | |||
Sbjct 786 ATTTGGATCCGGTGTAATAACTGTTCGAGCTGAGAAATCCACTCGTTTACCCATCAAATT 845
Query 394135 TCCACGAATTCTACCTTCTTTACC 394158
||||||||||| ||||| || ||
Sbjct 846 TCCACGAATTCGGCCTTCCTTCCC 869
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4022505576031490
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |