Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25] 128,401 sequences; 322,334,493 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq27460 118 8e-22 seq29780 114 1e-20 seq73431 102 6e-17 seq14519 102 6e-17 seq82153 89.7 4e-13 seq65209 87.8 1e-12 >seq27460 Length=3287 Score = 118 bits (130), Expect = 8e-22 Identities = 113/145 (78%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||||||||| |||| ||| || ||||| ||||| |||||||| || || ||||||||| Sbjct 2235 TTACCTGCAAAGATCAGACGTTGCTGATCCGGCGGGATGCCTTCCTTGTCCTGAATTTTT 2294 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| |||| | || || || | |||||| ||||| |||| ||| ||||||||| Sbjct 2295 GTCTTCACATTTTCGATGGTATCCGAGGATTCCACCTCAAGCGTGATCGTCTTGCCGGTT 2354 Query 101447 AAAGTTTTTACAAATATCTGCATGG 101471 | || || || || || ||||||| Sbjct 2355 AGCGTCTTCACGAAGATTTGCATGG 2379 >seq29780 Length=3062 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 101273 GTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCT 101332 || || ||||| ||||| || ||||| | | ||| | | || |||| ||||| || Sbjct 36 GTCGACTCTTTCTGTATGTTATAATCCGATAGAGTGCGACCGTCTTCCAGCTGCTTGCCG 95 Query 101333 GCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTT 101392 ||||| || || ||||| ||||| || || ||||||||||| || || || || || Sbjct 96 GCAAAAATTAAGCGCTGCTGATCTGGGGGGATGCCTTCTTTGTCCTGGATCTTCGCCTTG 155 Query 101393 ACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTT 101452 || |||| | || || |||| ||||||||| | ||||| ||| || || || |||||| Sbjct 156 ACGTTTTCGATCGTATCCGACGCTTCCACTTCCAAAGTGATCGTCTTCCCCGTCAAAGTT 215 Query 101453 TTTACAAATATCTGCATG 101470 || || || || |||||| Sbjct 216 TTGACGAAAATTTGCATG 233 Score = 114 bits (126), Expect = 1e-20 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 101324 TGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATT 101383 ||| |||| || || || | |||||| ||||| || ||||||||||| || || ||||| Sbjct 502 TGCATACCAGCGAAAATAAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGAATC 561 Query 101384 TTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCG 101443 || ||||| | || | ||||| |||| |||||||| ||||||| ||||||||| Sbjct 562 TTCGCCTTTACGTTCTCGATCGTGTCGGACGGCTCCACTTCCAGAGTGATTGTTTTGCCG 621 Query 101444 GTTAAAGTTTTTACAAATATCTGCAT 101469 || | |||||| ||||| |||||||| Sbjct 622 GTCAGAGTTTTAACAAAAATCTGCAT 647 >seq73431 Length=1108 Score = 102 bits (112), Expect = 6e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374 || ||||| ||||| || ||||| || || | ||| ||||| || || ||||||||||| Sbjct 412 TCTTCCAACTGCTTGCCAGCAAAAATTAAGCTCTGCTGATCTGGGGGGATGCCTTCTTTG 471 Query 101375 TCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACC 101434 | || || || || || |||| | || || |||| ||||||||||| ||||| | Sbjct 472 TGCTGGATCTTCGCCTTGACGCTTTCGATCGTATCCGACGCTTCCACTTCAAAAGTGATC 531 Query 101435 GTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || || || |||||||| || || || |||||| Sbjct 532 GTCTTCCCTGTCAAAGTTTTGACGAAAATTTGCATG 567 >seq14519 Length=5345 Score = 102 bits (112), Expect = 6e-17 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 101325 GCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTT 101384 ||| ||| ||||| || | ||||| ||||| || || ||||| ||||| || ||||||| Sbjct 4054 GCTCACCAGCAAAGATGAGGCGCTGCTGATCCGGAGGGATGCCCTCTTTGTCCTGAATTT 3995 Query 101385 TTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGG 101444 | ||| ||| |||| | || || || | || || || | ||||| |||||| || | Sbjct 3994 TCGCTTTAACATTTTCAATCGTATCCGATGCCTCTACCTCCAAAGTGATCGTTTTACCCG 3935 Query 101445 TTAAAGTTTTTACAAATATCTGCATG 101470 |||| ||||||||||| || |||||| Sbjct 3934 TTAAGGTTTTTACAAAAATTTGCATG 3909 Score = 96.9 bits (106), Expect = 3e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 101333 GCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTT 101392 ||||| || | ||||| ||||| || ||||| || || || || ||||| || ||| Sbjct 4616 GCAAAGATAAGCCGCTGCTGATCCGGTGGAATACCCTCCTTGTCCTGAATCTTCGCTTTC 4557 Query 101393 ACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTT 101452 ||| |||| | || || |||| ||| ||||| || |||| |||||||| || ||||| Sbjct 4556 ACATTTTCGATGGTATCTGACGCTTCGACTTCCAGCGTGATGGTTTTGCCAGTCAAAGTC 4497 Query 101453 TTTACAAATATCTGCATG 101470 || || |||||||||||| Sbjct 4496 TTGACGAATATCTGCATG 4479 >seq82153 Length=950 Score = 89.7 bits (98), Expect = 4e-13 Identities = 102/135 (76%), Gaps = 8/135 (6%) Strand=Plus/Plus Query 101332 TGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTT 101391 || ||||| |||||||| ||||| || ||||||||||| || || ||||| || ||| Sbjct 662 TGTAAATA--AAACGCTGCTGATCAGGAGGAATGCCTTCCTTTTCCTGAATCTTCGCTTT 719 Query 101392 TACAATTTCTAC---AGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAA 101448 |||| || || |||||||||| |||||||| ||| || ||||||||||| | Sbjct 720 TACA---TCCACGGTCGTGTCAGACGGCTCCACTTCCAGAACGATTGTTTTGCCGGTAAG 776 Query 101449 AGTTTTTACAAATAT 101463 | |||| ||||| || Sbjct 777 ACTTTTAACAAAAAT 791 >seq65209 Length=1292 Score = 87.8 bits (96), Expect = 1e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 101324 TGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATT 101383 ||| |||| ||||| || | ||||| ||||| || |||||||||||||| || || || Sbjct 955 TGCATACCAGCAAAGATAAGTCGCTGCTGATCTGGGGGAATGCCTTCTTTGTCCTGGATC 1014 Query 101384 TTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCG 101443 ||| || || |||| | ||||| |||| ||||| || | |||| || |||||| Sbjct 1015 TTTGCCTTGACGTTTTCAATCGTGTCGGACGCCTCCACCTCCAATGTGATTGTCTTGCCG 1074 Query 101444 GTTAAAGTTTTTACAAATATCTGCAT 101469 || | ||| || || || || ||||| Sbjct 1075 GTGAGAGTCTTCACGAAAATTTGCAT 1100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395658269009157