Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25]
128,401 sequences; 322,334,493 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq27460 118 8e-22
seq29780 114 1e-20
seq73431 102 6e-17
seq14519 102 6e-17
seq82153 89.7 4e-13
seq65209 87.8 1e-12
>seq27460
Length=3287
Score = 118 bits (130), Expect = 8e-22
Identities = 113/145 (78%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
||||||||||| |||| ||| || ||||| ||||| |||||||| || || |||||||||
Sbjct 2235 TTACCTGCAAAGATCAGACGTTGCTGATCCGGCGGGATGCCTTCCTTGTCCTGAATTTTT 2294
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
|| ||| |||| | || || || | |||||| ||||| |||| ||| |||||||||
Sbjct 2295 GTCTTCACATTTTCGATGGTATCCGAGGATTCCACCTCAAGCGTGATCGTCTTGCCGGTT 2354
Query 101447 AAAGTTTTTACAAATATCTGCATGG 101471
| || || || || || |||||||
Sbjct 2355 AGCGTCTTCACGAAGATTTGCATGG 2379
>seq29780
Length=3062
Score = 114 bits (126), Expect = 1e-20
Identities = 144/198 (73%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 101273 GTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCT 101332
|| || ||||| ||||| || ||||| | | ||| | | || |||| ||||| ||
Sbjct 36 GTCGACTCTTTCTGTATGTTATAATCCGATAGAGTGCGACCGTCTTCCAGCTGCTTGCCG 95
Query 101333 GCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTT 101392
||||| || || ||||| ||||| || || ||||||||||| || || || || ||
Sbjct 96 GCAAAAATTAAGCGCTGCTGATCTGGGGGGATGCCTTCTTTGTCCTGGATCTTCGCCTTG 155
Query 101393 ACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTT 101452
|| |||| | || || |||| ||||||||| | ||||| ||| || || || ||||||
Sbjct 156 ACGTTTTCGATCGTATCCGACGCTTCCACTTCCAAAGTGATCGTCTTCCCCGTCAAAGTT 215
Query 101453 TTTACAAATATCTGCATG 101470
|| || || || ||||||
Sbjct 216 TTGACGAAAATTTGCATG 233
Score = 114 bits (126), Expect = 1e-20
Identities = 113/146 (77%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 101324 TGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATT 101383
||| |||| || || || | |||||| ||||| || ||||||||||| || || |||||
Sbjct 502 TGCATACCAGCGAAAATAAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGAATC 561
Query 101384 TTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCG 101443
|| ||||| | || | ||||| |||| |||||||| ||||||| |||||||||
Sbjct 562 TTCGCCTTTACGTTCTCGATCGTGTCGGACGGCTCCACTTCCAGAGTGATTGTTTTGCCG 621
Query 101444 GTTAAAGTTTTTACAAATATCTGCAT 101469
|| | |||||| ||||| ||||||||
Sbjct 622 GTCAGAGTTTTAACAAAAATCTGCAT 647
>seq73431
Length=1108
Score = 102 bits (112), Expect = 6e-17
Identities = 116/156 (74%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374
|| ||||| ||||| || ||||| || || | ||| ||||| || || |||||||||||
Sbjct 412 TCTTCCAACTGCTTGCCAGCAAAAATTAAGCTCTGCTGATCTGGGGGGATGCCTTCTTTG 471
Query 101375 TCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACC 101434
| || || || || || |||| | || || |||| ||||||||||| ||||| |
Sbjct 472 TGCTGGATCTTCGCCTTGACGCTTTCGATCGTATCCGACGCTTCCACTTCAAAAGTGATC 531
Query 101435 GTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470
|| || || || |||||||| || || || ||||||
Sbjct 532 GTCTTCCCTGTCAAAGTTTTGACGAAAATTTGCATG 567
>seq14519
Length=5345
Score = 102 bits (112), Expect = 6e-17
Identities = 110/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 101325 GCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTT 101384
||| ||| ||||| || | ||||| ||||| || || ||||| ||||| || |||||||
Sbjct 4054 GCTCACCAGCAAAGATGAGGCGCTGCTGATCCGGAGGGATGCCCTCTTTGTCCTGAATTT 3995
Query 101385 TTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGG 101444
| ||| ||| |||| | || || || | || || || | ||||| |||||| || |
Sbjct 3994 TCGCTTTAACATTTTCAATCGTATCCGATGCCTCTACCTCCAAAGTGATCGTTTTACCCG 3935
Query 101445 TTAAAGTTTTTACAAATATCTGCATG 101470
|||| ||||||||||| || ||||||
Sbjct 3934 TTAAGGTTTTTACAAAAATTTGCATG 3909
Score = 96.9 bits (106), Expect = 3e-15
Identities = 104/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 101333 GCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTT 101392
||||| || | ||||| ||||| || ||||| || || || || ||||| || |||
Sbjct 4616 GCAAAGATAAGCCGCTGCTGATCCGGTGGAATACCCTCCTTGTCCTGAATCTTCGCTTTC 4557
Query 101393 ACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTT 101452
||| |||| | || || |||| ||| ||||| || |||| |||||||| || |||||
Sbjct 4556 ACATTTTCGATGGTATCTGACGCTTCGACTTCCAGCGTGATGGTTTTGCCAGTCAAAGTC 4497
Query 101453 TTTACAAATATCTGCATG 101470
|| || ||||||||||||
Sbjct 4496 TTGACGAATATCTGCATG 4479
>seq82153
Length=950
Score = 89.7 bits (98), Expect = 4e-13
Identities = 102/135 (76%), Gaps = 8/135 (6%)
Strand=Plus/Plus
Query 101332 TGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTT 101391
|| ||||| |||||||| ||||| || ||||||||||| || || ||||| || |||
Sbjct 662 TGTAAATA--AAACGCTGCTGATCAGGAGGAATGCCTTCCTTTTCCTGAATCTTCGCTTT 719
Query 101392 TACAATTTCTAC---AGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAA 101448
|||| || || |||||||||| |||||||| ||| || ||||||||||| |
Sbjct 720 TACA---TCCACGGTCGTGTCAGACGGCTCCACTTCCAGAACGATTGTTTTGCCGGTAAG 776
Query 101449 AGTTTTTACAAATAT 101463
| |||| ||||| ||
Sbjct 777 ACTTTTAACAAAAAT 791
>seq65209
Length=1292
Score = 87.8 bits (96), Expect = 1e-12
Identities = 107/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 101324 TGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATT 101383
||| |||| ||||| || | ||||| ||||| || |||||||||||||| || || ||
Sbjct 955 TGCATACCAGCAAAGATAAGTCGCTGCTGATCTGGGGGAATGCCTTCTTTGTCCTGGATC 1014
Query 101384 TTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCG 101443
||| || || |||| | ||||| |||| ||||| || | |||| || ||||||
Sbjct 1015 TTTGCCTTGACGTTTTCAATCGTGTCGGACGCCTCCACCTCCAATGTGATTGTCTTGCCG 1074
Query 101444 GTTAAAGTTTTTACAAATATCTGCAT 101469
|| | ||| || || || || |||||
Sbjct 1075 GTGAGAGTCTTCACGAAAATTTGCAT 1100
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395658269009157
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |