Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25] 128,401 sequences; 322,334,493 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq29780 113 3e-20 seq65209 102 6e-17 seq14519 93.3 3e-14 seq73431 89.7 4e-13 >seq29780 Length=3062 Score = 113 bits (124), Expect = 3e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 |||||| || || || ||||| |||||| | ||| |||| |||| |||||| |||||||| Sbjct 41 CTCTTTCTGTATGTTATAATCCGATAGAGTGCGACCGTCTTCCAGCTGCTTGCCGGCAAA 100 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || | ||||| ||||| | ||| | ||| || ||||| ||||| || || Sbjct 101 AATTAAGCGCTGCTGATCTGGGGGGATGCCTTCTTTGTCCTGGATCTTCGCCTTGACGTT 160 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || ||||| ||||| |||| || ||||| || |||||||||||||| || Sbjct 161 TTCGATCGTATCCGACGCTTCCACTTCCAAAGTGATCGTCTTCCCCGTCAAAGTTTTGAC 220 Query 48755 AAAAATCTGCAT 48766 ||||| ||||| Sbjct 221 GAAAATTTGCAT 232 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 48621 TGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATC 48680 ||| |||| || || || || ||||| ||||| | |||| ||| |||||||| |||| Sbjct 502 TGCATACCAGCGAAAATAAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGAATC 561 Query 48681 TTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCC 48740 || ||||| | | | || |||| |||||| |||| || || ||||| || Sbjct 562 TTCGCCTTTACGTTCTCGATCGTGTCGGACGGCTCCACTTCCAGAGTGATTGTTTTGCCG 621 Query 48741 GTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| |||||| |||||||||||||| Sbjct 622 GTCAGAGTTTTAACAAAAATCTGCAT 647 >seq65209 Length=1292 Score = 102 bits (112), Expect = 6e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || ||||| || || ||||| || | | | ||| |||| ||||||||||| |||||||| Sbjct 497 TCCTTTTGGATGTTATAATCCGACAAAGTGCGACCGTCCTCCAACTGCTTGCCGGCAAAA 556 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || || || ||||||| || | ||||| ||||| ||||| || || Sbjct 557 ATAAGACGTTGCTGATCCGGAGGGATACCCTCTTTGTCCTGGATCTTCGCCTTAACGTTC 616 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || |||||||| |||| || || || || |||||||| ||||| || Sbjct 617 TCAATGGTGTCCGATGCCTCCACTTCCAGAGTGATTGTCTTGCCCGTCAACGTTTTGACG 676 Query 48756 AAAATCTGCAT 48766 ||||||||||| Sbjct 677 AAAATCTGCAT 687 >seq14519 Length=5345 Score = 93.3 bits (102), Expect = 3e-14 Identities = 112/151 (74%), Gaps = 1/151 (1%) Strand=Plus/Minus Query 48616 CCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGC 48675 ||||| ||| ||| ||||| || || ||||| ||||||| || | |||||| ||||| Sbjct 4059 CCAAC-GCTCACCAGCAAAGATGAGGCGCTGCTGATCCGGAGGGATGCCCTCTTTGTCCT 4001 Query 48676 TAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTT 48735 ||| || ||| ||| | | | || || ||||| ||||||| || ||||||| Sbjct 4000 GAATTTTCGCTTTAACATTTTCAATCGTATCCGATGCCTCTACCTCCAAAGTGATCGTTT 3941 Query 48736 TTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 | ||||| || |||||||||||||| ||||| Sbjct 3940 TACCCGTTAAGGTTTTTACAAAAATTTGCAT 3910 Score = 87.8 bits (96), Expect = 1e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 48626 ACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTG 48685 ||| ||||| || || ||||| ||||||| |||| ||||||||||| |||||| Sbjct 5109 ACCAGCAAAGATAAGCCGCTGCTGATCCGGTGGAATACCCTCCTTGTCCTGAATCTTCGC 5050 Query 48686 TTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAA 48745 ||| ||| | | | ||||| ||||| || |||| |||||| ||||| || |||| Sbjct 5049 TTTCACATTCTCGATGGTATCTGATGCCTCGACTTCCAGCGTAATGGTTTTGCCAGTCAG 4990 Query 48746 AGTTTTTACAAAAATCTGCAT 48766 ||| || || || |||||||| Sbjct 4989 AGTCTTCACGAAGATCTGCAT 4969 Score = 86.0 bits (94), Expect = 5e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 48630 GCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTT 48689 ||||| || || ||||| ||||||| |||| ||||||||||| |||||| ||| Sbjct 4616 GCAAAGATAAGCCGCTGCTGATCCGGTGGAATACCCTCCTTGTCCTGAATCTTCGCTTTC 4557 Query 48690 ACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTT 48749 ||| | | | |||||||| || || |||| ||| || ||||| || |||||||| Sbjct 4556 ACATTTTCGATGGTATCTGACGCTTCGACTTCCAGCGTGATGGTTTTGCCAGTCAAAGTC 4497 Query 48750 TTTACAAAAATCTGCAT 48766 || || || |||||||| Sbjct 4496 TTGACGAATATCTGCAT 4480 >seq73431 Length=1108 Score = 89.7 bits (98), Expect = 4e-13 Identities = 133/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 48582 TGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGT 48641 || || || ||||| |||||| | ||| |||| ||||||||||| || ||||| || | Sbjct 382 TGGATGTTATAATCCGATAGAGTGCGACCGTCTTCCAACTGCTTGCCAGCAAAAATTAAG 441 Query 48642 CGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCT-AATCTTTTGTTTTACAGAACCCAC 48700 | ||| ||||| | ||| | ||| || |||| ||| ||||| || || | | Sbjct 442 CTCTGCTGATCTGGGGGGATGCCTTCTTTGT-GCTGGATCTTCGCCTTGACGCTTTCGAT 500 Query 48701 AGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAAT 48760 | || ||||| ||||| || | || ||||| || || ||||||||||| || ||||| Sbjct 501 CGTATCCGACGCTTCCACTTCAAAAGTGATCGTCTTCCCTGTCAAAGTTTTGACGAAAAT 560 Query 48761 CTGCAT 48766 ||||| Sbjct 561 TTGCAT 566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380341475630523