Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25]
128,401 sequences; 322,334,493 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq55198 140 2e-27
seq1065 136 3e-26
seq4775 127 1e-23
seq44043 91.5 1e-12
seq65209 87.8 1e-11
seq27460 86.0 4e-11
>seq55198
Length=1598
Score = 140 bits (154), Expect = 2e-27
Identities = 181/245 (74%), Gaps = 9/245 (4%)
Strand=Plus/Plus
Query 474638 GGTGAAACTAAACAA---TTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATG 474694
||||| ||||| || ||| | |||||| ||||||| | ||||||||| | ||||||
Sbjct 1236 GGTGACGCTAAAAAAACGTTTGCCCCGGAAGAAATTTCAGCGATGGTTTTAACGAAAATG 1295
Query 474695 AAACAAACCGC-GAGCTCATATCTTGGACAAGAAGT--AACTGATGCAGTAATTACTGTT 474751
|| ||| ||| ||| ||||| |||| || | || ||| | || || || || ||
Sbjct 1296 AAGGAAATCGCAGAGG-CATATATTGGGAAAAAGGTGGAAC--ACGCTGTGATCACAGTG 1352
Query 474752 CCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGT 474811
|| || || |||| |||| | ||||| || || || || ||||| |||| || || ||
Sbjct 1353 CCGGCTTACTTTACTGATGCGCAACGGCAGGCTACGAAGGATGCTGGAACGATCGCCGGC 1412
Query 474812 CTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGAT 474871
|| |||||| | |||||||| || |||||||| || ||||| | ||||||||||| |||
Sbjct 1413 CTAAATGTTGTCCGTATTATCAACGAACCAACGGCCGCCGCTATCGCTTATGGTCTAGAT 1472
Query 474872 AAGAA 474876
|| ||
Sbjct 1473 AAAAA 1477
>seq1065
Length=17194
Score = 136 bits (150), Expect = 3e-26
Identities = 245/353 (69%), Gaps = 9/353 (3%)
Strand=Plus/Plus
Query 474518 GATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATGCGT 474577
||||| ||| || ||||||| ||||| ||||| || | | || || || || |||
Sbjct 10204 GATGCAAAACGACTGATTGGGCGTAAATTTGACGACCCAGCAGTGCAGTCCGACATGAAG 10263
Query 474578 CATTGGCCTTTTAAGGTGATAAATGTTGGTGG---TAAACCATATAT--AGAAGCAATAC 474632
|||||||| || || ||||| |||| |||||| ||| ||| | | || | |||||
Sbjct 10264 CATTGGCCATTCAAAGTGATCAATGCTGGTGGCGGTAAGCCAAAGGTGCAGGTGGAATAC 10323
Query 474633 ACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAA 474692
| | || || || || ||| | ||||| |||| || || ||||| | ||| |
Sbjct 10324 AAG--GGCGAGACGAAGACCTTTACGCCGGAGGAAATCTCCTCGATGGTACTGATCAAGA 10381
Query 474693 TGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTT 474751
|||| | || || ||| |||| | || | |||| | |||||||| || || ||
Sbjct 10382 TGAAGGAGACGGCCGAGG-CATACTTGGGGCGCAAAGTGAAGGATGCAGTGATCACGGTA 10440
Query 474752 CCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGT 474811
||||| || || || || || ||||| || || || ||||||||||| ||| | ||
Sbjct 10441 CCAGCCTACTTCAACGACTCACAACGACAGGCTACCAAAGATGCGGGCGCAATCTCGGGC 10500
Query 474812 CTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGG 474864
|||||||| | ||||| || || ||||| || ||||| || |||| |||||
Sbjct 10501 CTTAATGTGCTGCGTATCATAAACGAACCTACTGCAGCTGCCATTGCGTATGG 10553
>seq4775
Length=9739
Score = 127 bits (140), Expect = 1e-23
Identities = 176/244 (72%), Gaps = 7/244 (3%)
Strand=Plus/Minus
Query 474638 GGTGAAACTAAACAA---TTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATG 474694
||||| ||||| || ||| | ||||| ||||||| | ||||| ||| | ||||||
Sbjct 363 GGTGACGCTAAAAAAACGTTTGCCCCGGAGGAAATTTCAGCGATGGTCTTAACGAAAATG 304
Query 474695 AAACAAACCGCG--AGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTC 474752
|| ||| ||| ||| ||||| | | ||| | ||| | || || || || || |
Sbjct 303 AAGGAAATCGCAGAAGCATATATCGGGAAGAAGGTGGAAC--ACGCCGTGATCACAGTGC 246
Query 474753 CAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTC 474812
| ||||| |||| |||| | ||||| || || || || ||||| |||| || || || |
Sbjct 245 CGGCATACTTTACTGATGCGCAACGGCAGGCTACGAAGGATGCTGGAACGATCGCCGGCC 186
Query 474813 TTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATA 474872
| || ||| | |||||||| || |||||||| || ||||| | ||||||||||| ||||
Sbjct 185 TAAACGTTGTCCGTATTATCAACGAACCAACGGCCGCCGCTATCGCTTATGGTCTAGATA 126
Query 474873 AGAA 474876
| ||
Sbjct 125 AAAA 122
>seq44043
Length=2071
Score = 91.5 bits (100), Expect = 1e-12
Identities = 101/135 (75%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 355393 TTGAGTTGTGTGAAGATATATCGTGCACTTGCATTATCTTTGCCTCCACTTAATCTTGTA 355452
|| ||||| ||||| ||||| || | ||| || |||||||||| || || | |||
Sbjct 600 TTTAGTTGAGTGAAAATATAACGCGGACTGGCGCTATCTTTGCCGCCTTGCAACCGTGTT 541
Query 355453 CCAAATTGACCATTGGGAAGTAATAAATTTATGTTGTTACTTCCAACATAATTTTGTGCC 355512
|| ||||||||| | ||||| || ||||||||||| || ||||| |||| ||| |||
Sbjct 540 CCGAATTGACCAATTGGAAGCAACAAATTTATGTTATTCGAACCAACGTAATCTTGCGCC 481
Query 355513 ATTTTTATTATAGTT 355527
| |||| ||| |||
Sbjct 480 AAATTTACTATCGTT 466
>seq65209
Length=1292
Score = 87.8 bits (96), Expect = 1e-11
Identities = 109/147 (74%), Gaps = 2/147 (1%)
Strand=Plus/Plus
Query 480624 AGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGA 480683
|| ||| | |||||||| ||||| || || ||||| || ||||| ||||| ||||| ||
Sbjct 952 AGGTGCATACCAGCAAAGATAAGTCGCTGCTGATCTGGGGGAATGCCTTCTTTGTCCTGG 1011
Query 480684 ATCTTTTGTTTGACAGCTTCAATAGTATCAGT-GTGTGAAGTTTCAAGGGTAATAGTTTT 480742
|||||| ||||| |||||| || || | | | | | ||| | | || || ||
Sbjct 1012 ATCTTTGCCTTGACGTTTTCAATCGTGTCGGACGCCTCCACCTCCAATG-TGATTGTCTT 1070
Query 480743 ACCGGTGAGAGTCTTAACGAAAATTTG 480769
|||||||||||||| |||||||||||
Sbjct 1071 GCCGGTGAGAGTCTTCACGAAAATTTG 1097
>seq27460
Length=3287
Score = 86.0 bits (94), Expect = 4e-11
Identities = 105/141 (74%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 480630 TTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTT 480689
|| || ||||| || |||||||| ||||| || || || ||||||||||| ||||| |||
Sbjct 2235 TTACCTGCAAAGATCAGACGTTGCTGATCCGGCGGGATGCCTTCCTTGTCCTGAAT-TTT 2293
Query 480690 TGT-TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGT 480748
||| || ||| ||| || ||||| | | | ||||| || || || || |||||
Sbjct 2294 TGTCTTCACATTTTCGATGGTATCCGAGGATTCCACCTCAAGCGTGATCGTCTTGCCGGT 2353
Query 480749 GAGAGTCTTAACGAAAATTTG 480769
|| ||||| ||||| |||||
Sbjct 2354 TAGCGTCTTCACGAAGATTTG 2374
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3262671458108348
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |