Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25] 128,401 sequences; 322,334,493 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq55198 140 2e-27 seq1065 136 3e-26 seq4775 127 1e-23 seq44043 91.5 1e-12 seq65209 87.8 1e-11 seq27460 86.0 4e-11 >seq55198 Length=1598 Score = 140 bits (154), Expect = 2e-27 Identities = 181/245 (74%), Gaps = 9/245 (4%) Strand=Plus/Plus Query 474638 GGTGAAACTAAACAA---TTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATG 474694 ||||| ||||| || ||| | |||||| ||||||| | ||||||||| | |||||| Sbjct 1236 GGTGACGCTAAAAAAACGTTTGCCCCGGAAGAAATTTCAGCGATGGTTTTAACGAAAATG 1295 Query 474695 AAACAAACCGC-GAGCTCATATCTTGGACAAGAAGT--AACTGATGCAGTAATTACTGTT 474751 || ||| ||| ||| ||||| |||| || | || ||| | || || || || || Sbjct 1296 AAGGAAATCGCAGAGG-CATATATTGGGAAAAAGGTGGAAC--ACGCTGTGATCACAGTG 1352 Query 474752 CCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGT 474811 || || || |||| |||| | ||||| || || || || ||||| |||| || || || Sbjct 1353 CCGGCTTACTTTACTGATGCGCAACGGCAGGCTACGAAGGATGCTGGAACGATCGCCGGC 1412 Query 474812 CTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGAT 474871 || |||||| | |||||||| || |||||||| || ||||| | ||||||||||| ||| Sbjct 1413 CTAAATGTTGTCCGTATTATCAACGAACCAACGGCCGCCGCTATCGCTTATGGTCTAGAT 1472 Query 474872 AAGAA 474876 || || Sbjct 1473 AAAAA 1477 >seq1065 Length=17194 Score = 136 bits (150), Expect = 3e-26 Identities = 245/353 (69%), Gaps = 9/353 (3%) Strand=Plus/Plus Query 474518 GATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATGCGT 474577 ||||| ||| || ||||||| ||||| ||||| || | | || || || || ||| Sbjct 10204 GATGCAAAACGACTGATTGGGCGTAAATTTGACGACCCAGCAGTGCAGTCCGACATGAAG 10263 Query 474578 CATTGGCCTTTTAAGGTGATAAATGTTGGTGG---TAAACCATATAT--AGAAGCAATAC 474632 |||||||| || || ||||| |||| |||||| ||| ||| | | || | ||||| Sbjct 10264 CATTGGCCATTCAAAGTGATCAATGCTGGTGGCGGTAAGCCAAAGGTGCAGGTGGAATAC 10323 Query 474633 ACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAA 474692 | | || || || || ||| | ||||| |||| || || ||||| | ||| | Sbjct 10324 AAG--GGCGAGACGAAGACCTTTACGCCGGAGGAAATCTCCTCGATGGTACTGATCAAGA 10381 Query 474693 TGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTT 474751 |||| | || || ||| |||| | || | |||| | |||||||| || || || Sbjct 10382 TGAAGGAGACGGCCGAGG-CATACTTGGGGCGCAAAGTGAAGGATGCAGTGATCACGGTA 10440 Query 474752 CCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGT 474811 ||||| || || || || || ||||| || || || ||||||||||| ||| | || Sbjct 10441 CCAGCCTACTTCAACGACTCACAACGACAGGCTACCAAAGATGCGGGCGCAATCTCGGGC 10500 Query 474812 CTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGG 474864 |||||||| | ||||| || || ||||| || ||||| || |||| ||||| Sbjct 10501 CTTAATGTGCTGCGTATCATAAACGAACCTACTGCAGCTGCCATTGCGTATGG 10553 >seq4775 Length=9739 Score = 127 bits (140), Expect = 1e-23 Identities = 176/244 (72%), Gaps = 7/244 (3%) Strand=Plus/Minus Query 474638 GGTGAAACTAAACAA---TTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATG 474694 ||||| ||||| || ||| | ||||| ||||||| | ||||| ||| | |||||| Sbjct 363 GGTGACGCTAAAAAAACGTTTGCCCCGGAGGAAATTTCAGCGATGGTCTTAACGAAAATG 304 Query 474695 AAACAAACCGCG--AGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTC 474752 || ||| ||| ||| ||||| | | ||| | ||| | || || || || || | Sbjct 303 AAGGAAATCGCAGAAGCATATATCGGGAAGAAGGTGGAAC--ACGCCGTGATCACAGTGC 246 Query 474753 CAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTC 474812 | ||||| |||| |||| | ||||| || || || || ||||| |||| || || || | Sbjct 245 CGGCATACTTTACTGATGCGCAACGGCAGGCTACGAAGGATGCTGGAACGATCGCCGGCC 186 Query 474813 TTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATA 474872 | || ||| | |||||||| || |||||||| || ||||| | ||||||||||| |||| Sbjct 185 TAAACGTTGTCCGTATTATCAACGAACCAACGGCCGCCGCTATCGCTTATGGTCTAGATA 126 Query 474873 AGAA 474876 | || Sbjct 125 AAAA 122 >seq44043 Length=2071 Score = 91.5 bits (100), Expect = 1e-12 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 355393 TTGAGTTGTGTGAAGATATATCGTGCACTTGCATTATCTTTGCCTCCACTTAATCTTGTA 355452 || ||||| ||||| ||||| || | ||| || |||||||||| || || | ||| Sbjct 600 TTTAGTTGAGTGAAAATATAACGCGGACTGGCGCTATCTTTGCCGCCTTGCAACCGTGTT 541 Query 355453 CCAAATTGACCATTGGGAAGTAATAAATTTATGTTGTTACTTCCAACATAATTTTGTGCC 355512 || ||||||||| | ||||| || ||||||||||| || ||||| |||| ||| ||| Sbjct 540 CCGAATTGACCAATTGGAAGCAACAAATTTATGTTATTCGAACCAACGTAATCTTGCGCC 481 Query 355513 ATTTTTATTATAGTT 355527 | |||| ||| ||| Sbjct 480 AAATTTACTATCGTT 466 >seq65209 Length=1292 Score = 87.8 bits (96), Expect = 1e-11 Identities = 109/147 (74%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 480624 AGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGA 480683 || ||| | |||||||| ||||| || || ||||| || ||||| ||||| ||||| || Sbjct 952 AGGTGCATACCAGCAAAGATAAGTCGCTGCTGATCTGGGGGAATGCCTTCTTTGTCCTGG 1011 Query 480684 ATCTTTTGTTTGACAGCTTCAATAGTATCAGT-GTGTGAAGTTTCAAGGGTAATAGTTTT 480742 |||||| ||||| |||||| || || | | | | | ||| | | || || || Sbjct 1012 ATCTTTGCCTTGACGTTTTCAATCGTGTCGGACGCCTCCACCTCCAATG-TGATTGTCTT 1070 Query 480743 ACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||||||||||||| ||||||||||| Sbjct 1071 GCCGGTGAGAGTCTTCACGAAAATTTG 1097 >seq27460 Length=3287 Score = 86.0 bits (94), Expect = 4e-11 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 480630 TTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTT 480689 || || ||||| || |||||||| ||||| || || || ||||||||||| ||||| ||| Sbjct 2235 TTACCTGCAAAGATCAGACGTTGCTGATCCGGCGGGATGCCTTCCTTGTCCTGAAT-TTT 2293 Query 480690 TGT-TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGT 480748 ||| || ||| ||| || ||||| | | | ||||| || || || || ||||| Sbjct 2294 TGTCTTCACATTTTCGATGGTATCCGAGGATTCCACCTCAAGCGTGATCGTCTTGCCGGT 2353 Query 480749 GAGAGTCTTAACGAAAATTTG 480769 || ||||| ||||| ||||| Sbjct 2354 TAGCGTCTTCACGAAGATTTG 2374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3262671458108348