Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25] 128,401 sequences; 322,334,493 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq29780 100 5e-16 seq14519 100 5e-16 seq65209 87.8 3e-12 >seq29780 Length=3062 Score = 100 bits (110), Expect = 5e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| || |||||||| || | |||||| || ||||| || |||| || | | Sbjct 18 CGAAGGACGAGATGCAAAGTCGACTCTTTCTGTATGTTATAATCCGATAGAGTGCGACCG 77 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | || || |||||||||||||| | ||| ||||| || || || |||||||| Sbjct 78 TCTTCCAGCTGCTTGCCGGCAAAAATTAAGCGCTGCTGATCTGGGGGGATGCCTTCTTTG 137 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || || | || | ||| || ||||| || | || ||||| | ||| || Sbjct 138 TCCTGGATCTTCGCCTTGACGTTTTCGATCGTATCCGACGCTTCCACTTCCAAAGTGATC 197 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || | ||||| || || |||||||| Sbjct 198 GTCTTCCCCGTCAAAGTTTTGACGAAAATTTGCAT 232 >seq14519 Length=5345 Score = 100 bits (110), Expect = 5e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 || ||||| || | | ||| ||||| ||||| || || ||||| || || ||||| | | Sbjct 4049 CCAGCAAAGATGAGGCGCTGCTGATCCGGAGGGATGCCCTCTTTGTCCTGAATTTTCGCT 3990 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 || | |||| ||| ||||| || | ||| || || | ||| || |||||||| |||| Sbjct 3989 TTAACATTTTCAATCGTATCCGATGCCTCTACCTCCAAAGTGATCGTTTTACCCGTTAAG 3930 Query 193341 GTTTTTACAAATATTTGCAT 193360 ||||||||||| |||||||| Sbjct 3929 GTTTTTACAAAAATTTGCAT 3910 >seq65209 Length=1292 Score = 87.8 bits (96), Expect = 3e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||| | | ||||| || |||||||| || | || || || ||||| || || Sbjct 460 ACCACCGCGAAGGCGAAGGACGAGATGCAAAGTCGATTCCTTTTGGATGTTATAATCCGA 519 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 || || | | || || || || || ||||||||||| | | || ||||| ||||| Sbjct 520 CAAAGTGCGACCGTCCTCCAACTGCTTGCCGGCAAAAATAAGACGTTGCTGATCCGGAGG 579 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 || || ||||| || || || || | || | || ||| || || || | ||| || Sbjct 580 GATACCCTCTTTGTCCTGGATCTTCGCCTTAACGTTCTCAATGGTGTCCGATGCCTCCAC 639 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| ||||| || || || || || | |||||| || || || ||||| Sbjct 640 TTCCAGAGTGATTGTCTTGCCCGTCAACGTTTTGACGAAAATCTGCAT 687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 898210443442320