Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25] 128,401 sequences; 322,334,493 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq29780 113 7e-20 seq73431 89.7 8e-13 >seq29780 Length=3062 Score = 113 bits (124), Expect = 7e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| ||||| || || || || || || ||||| |||| || Sbjct 232 ATGCAAATTTTCGTCAAAACTTTGACGGGGAAGACGATCACTTTGGAAGTGGAAGCGTCG 173 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || |||||| || || || || || ||||||||||| || ||||| || Sbjct 172 GATACGATCGAAAACGTCAAGGCGAAGATCCAGGACAAAGAAGGCATCCCCCCAGATCAG 113 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | || |||| |||||| |||||||| ||||| | ||| |||| |||||||| Sbjct 112 CAGCGCTTAATTTTTGCCGGCAAGCAGCTGGAAGACGGTCGCACTCTATCGGATTATAAC 53 Query 156003 ATATCCAAAGAGGCGAC 156019 ||| |||||| |||| Sbjct 52 ATACAGAAAGAGTCGAC 36 >seq73431 Length=1108 Score = 89.7 bits (98), Expect = 8e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| ||||| || || || || || || ||||| |||| || Sbjct 566 ATGCAAATTTTCGTCAAAACTTTGACAGGGAAGACGATCACTTTTGAAGTGGAAGCGTCG 507 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || || ||| || || || || | ||||||||||| || ||||| || Sbjct 506 GATACGATCGAAAGCGTCAAGGCGAAGATCCAGCACAAAGAAGGCATCCCCCCAGATCAG 447 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || || |||| ||| || |||||| | ||||| | ||| |||| |||||||| Sbjct 446 CAGAGCTTAATTTTTGCTGGCAAGCAGTTGGAAGACGGTCGCACTCTATCGGATTATAAC 387 Query 156003 AT 156004 || Sbjct 386 AT 385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 730697336291600