Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25]
128,401 sequences; 322,334,493 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq29780 107 3e-18
seq73431 98.7 2e-15
seq14519 87.8 3e-12
>seq29780
Length=3062
Score = 107 bits (118), Expect = 3e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902
||||| | ||| || | || | ||| ||||| | |||||| || |||||||| |||
Sbjct 6 CCACCGCGAAGGCGAAGGACGAGATGCAAAGTCGACTCTTTCTGTATGTTATAATCCGAT 65
Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962
| || || |||| |||| || || || ||||||||||| | ||| || || || ||
Sbjct 66 AGAGTGCGACCGTCTTCCAGCTGCTTGCCGGCAAAAATTAAGCGCTGCTGATCTGGGGGG 125
Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022
|| |||||||| || || || || || || || || ||||| |||| ||| |||
Sbjct 126 ATGCCTTCTTTGTCCTGGATCTTCGCCTTGACGTTTTCGATCGTATCCGACGCTTCCACT 185
Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| | ||| || || || || || || ||||| | ||| || |||||
Sbjct 186 TCCAAAGTGATCGTCTTCCCCGTCAAAGTTTTGACGAAAATTTGCAT 232
>seq73431
Length=1108
Score = 98.7 bits (108), Expect = 2e-15
Identities = 131/182 (72%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947
|| |||||||| |||| || || |||| ||||| || || |||||||||||||| |||
Sbjct 385 ATGTTATAATCCGATAGAGTGCGACCGTCTTCCAACTGCTTGCCAGCAAAAATTAAGCTC 444
Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007
|| || || || || || |||||||| | || || || || || | || |||
Sbjct 445 TGCTGATCTGGGGGGATGCCTTCTTTGTGCTGGATCTTCGCCTTGACGCTTTCGATCGTA 504
Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067
|| |||| ||| ||||| | ||| || || || || || || ||||| | ||| || |||
Sbjct 505 TCCGACGCTTCCACTTCAAAAGTGATCGTCTTCCCTGTCAAAGTTTTGACGAAAATTTGC 564
Query 172068 AT 172069
||
Sbjct 565 AT 566
>seq14519
Length=5345
Score = 87.8 bits (96), Expect = 3e-12
Identities = 102/138 (74%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 171932 AGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTT 171991
|||||| || | | ||| || || ||||| || || || || || || || || |||
Sbjct 4617 AGCAAAGATAAGCCGCTGCTGATCCGGTGGAATACCCTCCTTGTCCTGAATCTTCGCTTT 4558
Query 171992 TACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGT 172051
||||| || |||||||||| ||| ||||| || || |||||||| ||||| || ||
Sbjct 4557 CACATTTTCGATGGTATCTGACGCTTCGACTTCCAGCGTGATGGTTTTGCCAGTCAAAGT 4498
Query 172052 TTTAATGAATATCTGCAT 172069
|| | ||||||||||||
Sbjct 4497 CTTGACGAATATCTGCAT 4480
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 903683245405800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |