Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25] 128,401 sequences; 322,334,493 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq29780 107 3e-18 seq73431 98.7 2e-15 seq14519 87.8 3e-12 >seq29780 Length=3062 Score = 107 bits (118), Expect = 3e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 ||||| | ||| || | || | ||| ||||| | |||||| || |||||||| ||| Sbjct 6 CCACCGCGAAGGCGAAGGACGAGATGCAAAGTCGACTCTTTCTGTATGTTATAATCCGAT 65 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 | || || |||| |||| || || || ||||||||||| | ||| || || || || Sbjct 66 AGAGTGCGACCGTCTTCCAGCTGCTTGCCGGCAAAAATTAAGCGCTGCTGATCTGGGGGG 125 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || |||||||| || || || || || || || || ||||| |||| ||| ||| Sbjct 126 ATGCCTTCTTTGTCCTGGATCTTCGCCTTGACGTTTTCGATCGTATCCGACGCTTCCACT 185 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || | ||| || || || || || || ||||| | ||| || ||||| Sbjct 186 TCCAAAGTGATCGTCTTCCCCGTCAAAGTTTTGACGAAAATTTGCAT 232 >seq73431 Length=1108 Score = 98.7 bits (108), Expect = 2e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || |||||||| |||| || || |||| ||||| || || |||||||||||||| ||| Sbjct 385 ATGTTATAATCCGATAGAGTGCGACCGTCTTCCAACTGCTTGCCAGCAAAAATTAAGCTC 444 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || || || || || || |||||||| | || || || || || | || ||| Sbjct 445 TGCTGATCTGGGGGGATGCCTTCTTTGTGCTGGATCTTCGCCTTGACGCTTTCGATCGTA 504 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || |||| ||| ||||| | ||| || || || || || || ||||| | ||| || ||| Sbjct 505 TCCGACGCTTCCACTTCAAAAGTGATCGTCTTCCCTGTCAAAGTTTTGACGAAAATTTGC 564 Query 172068 AT 172069 || Sbjct 565 AT 566 >seq14519 Length=5345 Score = 87.8 bits (96), Expect = 3e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 171932 AGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTT 171991 |||||| || | | ||| || || ||||| || || || || || || || || ||| Sbjct 4617 AGCAAAGATAAGCCGCTGCTGATCCGGTGGAATACCCTCCTTGTCCTGAATCTTCGCTTT 4558 Query 171992 TACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGT 172051 ||||| || |||||||||| ||| ||||| || || |||||||| ||||| || || Sbjct 4557 CACATTTTCGATGGTATCTGACGCTTCGACTTCCAGCGTGATGGTTTTGCCAGTCAAAGT 4498 Query 172052 TTTAATGAATATCTGCAT 172069 || | |||||||||||| Sbjct 4497 CTTGACGAATATCTGCAT 4480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903683245405800