Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25] 128,401 sequences; 322,334,493 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq21874 102 1e-15 seq76804 98.7 1e-14 >seq21874 Length=3970 Score = 102 bits (112), Expect = 1e-15 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 |||| ||||| ||| || || |||||||| || ||||| || |||| || ||| Sbjct 3787 GCCAACTCGCCTGGCAAAATGAGACGCACGGCAGTTTGGATTTCACGCGATGAAATGGTG 3728 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 || ||||| | || ||||| || | ||| |||| |||| || |||| || |||| Sbjct 3727 GAACGTTTGTTGTACTGTGCCAGGCGACTGGCTTCGGCAGCGATACGCTCGAACACGTCG 3668 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCC 1254511 ||||||||||||||||||| |||||||| ||| |||||||| Sbjct 3667 TTGACAAACGAGTTCATGATCGACATCGCCTTCGACGAGATGCC 3624 >seq76804 Length=1042 Score = 98.7 bits (108), Expect = 1e-14 Identities = 153/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 |||| |||||| | | ||||| ||||| || ||||| || || |||| ||| || Sbjct 243 GCCAACTCGCCGGGAAGAATCAGACGCACAGCAGTCTGAATTTCACGCGA--CGAAATTG 186 Query 1254408 TTG--CGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 ||| |||||||| | ||||||||||| | ||||| | | | || |||| | || Sbjct 185 TTGAGCGCTTGTTGTAATGCGCCAGACGACTCGCCTCAGCAGCCAGTCGTTCGAAAACGT 126 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 |||| ||||| |||||||| | ||||| | ||| || ||||| ||| || || | Sbjct 125 CGTTCACAAAAGAGTTCATTATTGACATGGCCTTTGACGAAATGCCTGTGTCCGGATGAA 66 Query 1254526 CCTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 ||||||| | ||| ||||||| || |||||| || Sbjct 65 CCTGCTTCAACACGCGGTAGATGTACACCGAGTAGGA 29 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6096602012638117