Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25] 128,401 sequences; 322,334,493 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq65209 125 6e-24 seq27460 96.9 3e-15 seq29780 89.7 5e-13 >seq65209 Length=1292 Score = 125 bits (138), Expect = 6e-24 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | |||||| | || || || || || || || ||||| || || | Sbjct 687 ATGCAGATTTTCGTCAAAACGTTGACGGGCAAGACAATCACTCTGGAAGTGGAGGCATCG 628 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| ||| | || |||||| |||||||| || || ||||| ||||| Sbjct 627 GACACCATTGAGAACGTTAAGGCGAA-GATCCAGGACAAAGAGGGTATCCCTCCGGATCA 569 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||||| | || |||||||| || ||| ||||||| | | |||| |||||||| Sbjct 568 GCAACGTCTTATTTTTGCCGGCAAGCAGTTGGAGGACGGTCGCACTTTGTCGGATTATAA 509 Query 24883 CATTCAAAAGGAATCGAC 24900 ||| |||||||||||||| Sbjct 508 CATCCAAAAGGAATCGAC 491 >seq27460 Length=3287 Score = 96.9 bits (106), Expect = 3e-15 Identities = 110/145 (76%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || ||||||||||| || || || ||||| || || ||| || | Sbjct 2377 ATGCAAATCTTCGTGAAGACGCTAACCGGCAAGACGATCACGCTTGAGGTGGAATCCTCG 2318 Query 24764 GACACAGTAGAAACGGT-AAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | |||| || || |||||| || || ||||| ||||| || || || ||||| Sbjct 2317 GATACCATCGAAAATGTGAAGACAAAA-ATTCAGGACAAGGAAGGCATCCCGCCGGATCA 2259 Query 24823 ACAACGTTTGATCTTTGCCGGGAAA 24847 |||||| |||||||||| || ||| Sbjct 2258 GCAACGTCTGATCTTTGCAGGTAAA 2234 >seq29780 Length=3062 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | ||||| | || || || || || || | ||||| ||||| | Sbjct 232 ATGCAAATTTTCGTCAAAACTTTGACGGGGAAGACGATCACTTTGGAAGTGGAAGCGTCG 173 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || || |||||||| ||||||||||| || || || ||||| Sbjct 172 GATACGATCGAAAACGTCAAGGCGAAGATCCAGGACAAAGAAGGCATCCCCCCAGATCAG 113 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || || || |||||||| || |||||||| || | | | || ||||||||| Sbjct 112 CAGCGCTTAATTTTTGCCGGCAAGCAGCTGGAAGACGGTCGCACTCTATCGGATTATAAC 53 Query 24884 ATTCAAAAGGAATCGAC 24900 || || || || ||||| Sbjct 52 ATACAGAAAGAGTCGAC 36 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449175508728280