Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25]
128,401 sequences; 322,334,493 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq65209 125 6e-24
seq27460 96.9 3e-15
seq29780 89.7 5e-13
>seq65209
Length=1292
Score = 125 bits (138), Expect = 6e-24
Identities = 148/198 (75%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||| || | |||||| | || || || || || || || ||||| || || |
Sbjct 687 ATGCAGATTTTCGTCAAAACGTTGACGGGCAAGACAATCACTCTGGAAGTGGAGGCATCG 628
Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
||||| | || |||| ||| | || |||||| |||||||| || || ||||| |||||
Sbjct 627 GACACCATTGAGAACGTTAAGGCGAA-GATCCAGGACAAAGAGGGTATCCCTCCGGATCA 569
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
|||||| | || |||||||| || ||| ||||||| | | |||| ||||||||
Sbjct 568 GCAACGTCTTATTTTTGCCGGCAAGCAGTTGGAGGACGGTCGCACTTTGTCGGATTATAA 509
Query 24883 CATTCAAAAGGAATCGAC 24900
||| ||||||||||||||
Sbjct 508 CATCCAAAAGGAATCGAC 491
>seq27460
Length=3287
Score = 96.9 bits (106), Expect = 3e-15
Identities = 110/145 (76%), Gaps = 2/145 (1%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| ||||| | || ||||||||||| || || || ||||| || || ||| || |
Sbjct 2377 ATGCAAATCTTCGTGAAGACGCTAACCGGCAAGACGATCACGCTTGAGGTGGAATCCTCG 2318
Query 24764 GACACAGTAGAAACGGT-AAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|| || | |||| || || |||||| || || ||||| ||||| || || || |||||
Sbjct 2317 GATACCATCGAAAATGTGAAGACAAAA-ATTCAGGACAAGGAAGGCATCCCGCCGGATCA 2259
Query 24823 ACAACGTTTGATCTTTGCCGGGAAA 24847
|||||| |||||||||| || |||
Sbjct 2258 GCAACGTCTGATCTTTGCAGGTAAA 2234
>seq29780
Length=3062
Score = 89.7 bits (98), Expect = 5e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || || | ||||| | || || || || || || | ||||| ||||| |
Sbjct 232 ATGCAAATTTTCGTCAAAACTTTGACGGGGAAGACGATCACTTTGGAAGTGGAAGCGTCG 173
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| || | |||| || || |||||||| ||||||||||| || || || |||||
Sbjct 172 GATACGATCGAAAACGTCAAGGCGAAGATCCAGGACAAAGAAGGCATCCCCCCAGATCAG 113
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| || || || |||||||| || |||||||| || | | | || |||||||||
Sbjct 112 CAGCGCTTAATTTTTGCCGGCAAGCAGCTGGAAGACGGTCGCACTCTATCGGATTATAAC 53
Query 24884 ATTCAAAAGGAATCGAC 24900
|| || || || |||||
Sbjct 52 ATACAGAAAGAGTCGAC 36
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449175508728280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |