Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25] 128,401 sequences; 322,334,493 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq21874 140 5e-27 seq1761 105 1e-16 >seq21874 Length=3970 Score = 140 bits (154), Expect = 5e-27 Identities = 158/209 (76%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||||||||| || ||||| || || || ||| | |||| ||||| ||| Sbjct 3831 TGTACTTGGTGACGGCCTTCGTGCCCTCAGACACCGCATGCTTCGCCAACTCGCCTGGCA 3772 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || |||||||| || ||||| || || | || ||| || ||||| || | Sbjct 3771 AAATGAGACGCACGGCAGTTTGGATTTCACGCGATGAAATGGTGGAACGTTTGTT-GTAC 3713 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | |||||||| | ||| |||| |||| || |||| || ||||||||||||||||||| Sbjct 3712 TGTGCCAGGCGACTGGCTTCGGCAGCGATACGCTCGAACACGTCGTTGACAAACGAGTTC 3653 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCC 1485677 ||||||||||||| || |||||||| Sbjct 3652 ATGATCGACATCGCCTTCGACGAGATGCC 3624 >seq1761 Length=14626 Score = 105 bits (116), Expect = 1e-16 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531 |||||||||||||| |||||||| || || || ||||| | |||| ||| ||| | | Sbjct 6299 TACTTGGTGACGGCTTTGGTACCTTCCGACACAGCGTGTTTCGCCAATTCACCGGGAAGA 6358 Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGC 1485591 ||||| || || | ||||| || || || | |||||| ||||||||| | || Sbjct 6359 ATCAGCCGTACAGAAGTCTGAATTTCACGAGACGAGATCGTCGAGCGCTTGTTGTAGTGC 6418 Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 || | ||||| || || | | | | || || | | |||||| |||||||| ||||| Sbjct 6419 GCTAAGCGGCTCGCTTCAGCGGCTAATCGTTCAAAAACGTCGTTCACAAACGAATTCATT 6478 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 || ||||| | ||| || ||||| || || || |||||||| | ||| Sbjct 6479 ATTGACATTGCTTTCGATGAAATGCCAGTATCCGGATGAACCTGCTTCAACAC 6531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7902587799993039