Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25] 128,401 sequences; 322,334,493 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq65209 109 4e-19 seq14519 93.3 3e-14 seq29780 91.5 1e-13 seq73431 86.0 5e-12 seq27460 84.2 2e-11 >seq65209 Length=1292 Score = 109 bits (120), Expect = 4e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || || | ||| | || ||||| ||||| ||||||||||||| | |||||| Sbjct 473 CGAAGGACGAGATGCAAAGTCGATTCCTTTTGGATGTTATAATCCGACAAAGTGCGACCG 532 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || | || ||||| ||| | || | | |||||||||||| || |||||||||||| Sbjct 533 TCCTCCAACTGCTTGCCGGCAAAAATAAGACGTTGCTGATCCGGAGGGATACCCTCTTTG 592 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || || || | || | ||||| || || ||||| ||||| || Sbjct 593 TCCTGGATCTTCGCCTTAACGTTCTCAATGGTGTCCGATGCCTCCACTTCCAGAGTGATT 652 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || || ||||| || || |||||||| Sbjct 653 GTCTTGCCCGTCAACGTTTTGACGAAAATCTGCAT 687 >seq14519 Length=5345 Score = 93.3 bits (102), Expect = 3e-14 Identities = 96/123 (78%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723 ||||||||||| ||||||||||| ||||| || ||| || | ||| ||| |||| | || Sbjct 4601 TGCTGATCCGGTGGAATACCCTCCTTGTCCTG-AATCTTCGCTTTCACATTTTCGATGGT 4543 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 || || ||| ||||| || || || ||||||||||| || || || || |||||||| Sbjct 4542 ATCTGACGCTTCGACTTCCAGCGTGATGGTTTTGCCAGTCAAAGTCTTGACGAATATCTG 4483 Query 29784 CAT 29786 ||| Sbjct 4482 CAT 4480 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG- 29705 |||||| | || | | ||||||||||| || || ||||||||||| || |||||| | Sbjct 4049 CCAGCAAAGATGAGGCGCTGCTGATCCGGAGGGATGCCCTCTTTGTCCTG-AATTTTCGC 3991 Query 29706 TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAA 29765 ||| ||| |||| | || || || ||||| || | ||| || ||||| || ||||| Sbjct 3990 TTTAACATTTTCAATCGTATCCGATGCCTCTACCTCCAAAGTGATCGTTTTACCCGTTAA 3931 Query 29766 GGTTTTAACAAATATCTGCAT 29786 |||||| ||||| || ||||| Sbjct 3930 GGTTTTTACAAAAATTTGCAT 3910 >seq29780 Length=3062 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || || | ||| | || || ||||| || ||||||||||||| | |||||| Sbjct 18 CGAAGGACGAGATGCAAAGTCGACTCTTTCTGTATGTTATAATCCGATAGAGTGCGACCG 77 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || ||||| ||| | || || | |||||||| || || || || |||||| Sbjct 78 TCTTCCAGCTGCTTGCCGGCAAAAATTAAGCGCTGCTGATCTGGGGGGATGCCTTCTTTG 137 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || ||||| |||| | || || || ||| ||||| | ||| || Sbjct 138 TCCTGGATCTTCGCCTTGACGTTTTCGATCGTATCCGACGCTTCCACTTCCAAAGTGATC 197 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || ||||| || || || ||||| Sbjct 198 GTCTTCCCCGTCAAAGTTTTGACGAAAATTTGCAT 232 >seq73431 Length=1108 Score = 86.0 bits (94), Expect = 5e-12 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 29602 TGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAAT 29661 || ||||||||||||| | |||||| || || | || ||||||||| | || || Sbjct 382 TGGATGTTATAATCCGATAGAGTGCGACCGTCTTCCAACTGCTTGCCAGCAAAAATTAAG 441 Query 29662 CTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACA 29721 || |||||||| || || || || ||||||| || | || ||||| |||| | Sbjct 442 CTCTGCTGATCTGGGGGGATGCCTTCTTTGTGCTGGATCTTCGCCTTGACGCTTTCGATC 501 Query 29722 GTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATC 29781 || || || ||| ||||||| ||| || || || || || || ||||| || || || Sbjct 502 GTATCCGACGCTTCCACTTCAAAAGTGATCGTCTTCCCTGTCAAAGTTTTGACGAAAATT 561 Query 29782 TGCAT 29786 ||||| Sbjct 562 TGCAT 566 >seq27460 Length=3287 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTT 29702 ||| || ||| | |||| | ||||||||||||||| || || || ||||| || ||||| Sbjct 2234 TTTACCTGCAAAGATCAGACGTTGCTGATCCGGCGGGATGCCTTCCTTGTCCTG-AATTT 2292 Query 29703 TTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAG 29761 |||| || ||| |||| | || || || ||| || ||||| || || || ||||| | Sbjct 2293 TTGTCTTCACATTTTCGATGGTATCCGAGGATTCCACCTCAAGCGTGATCGTCTTGCCGG 2352 Query 29762 TTAAGGTTTTAACAAATATCTGCAT 29786 ||| || || || || || ||||| Sbjct 2353 TTAGCGTCTTCACGAAGATTTGCAT 2377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384616375409541