Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25]
128,401 sequences; 322,334,493 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq65209 109 4e-19
seq14519 93.3 3e-14
seq29780 91.5 1e-13
seq73431 86.0 5e-12
seq27460 84.2 2e-11
>seq65209
Length=1292
Score = 109 bits (120), Expect = 4e-19
Identities = 153/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631
|| || || | ||| | || ||||| ||||| ||||||||||||| | ||||||
Sbjct 473 CGAAGGACGAGATGCAAAGTCGATTCCTTTTGGATGTTATAATCCGACAAAGTGCGACCG 532
Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691
|| || | || ||||| ||| | || | | |||||||||||| || ||||||||||||
Sbjct 533 TCCTCCAACTGCTTGCCGGCAAAAATAAGACGTTGCTGATCCGGAGGGATACCCTCTTTG 592
Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751
|| || | || || || | || | ||||| || || ||||| ||||| ||
Sbjct 593 TCCTGGATCTTCGCCTTAACGTTCTCAATGGTGTCCGATGCCTCCACTTCCAGAGTGATT 652
Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| ||||| || || ||||| || || ||||||||
Sbjct 653 GTCTTGCCCGTCAACGTTTTGACGAAAATCTGCAT 687
>seq14519
Length=5345
Score = 93.3 bits (102), Expect = 3e-14
Identities = 96/123 (78%), Gaps = 2/123 (2%)
Strand=Plus/Minus
Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723
||||||||||| ||||||||||| ||||| || ||| || | ||| ||| |||| | ||
Sbjct 4601 TGCTGATCCGGTGGAATACCCTCCTTGTCCTG-AATCTTCGCTTTCACATTTTCGATGGT 4543
Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783
|| || ||| ||||| || || || ||||||||||| || || || || ||||||||
Sbjct 4542 ATCTGACGCTTCGACTTCCAGCGTGATGGTTTTGCCAGTCAAAGTCTTGACGAATATCTG 4483
Query 29784 CAT 29786
|||
Sbjct 4482 CAT 4480
Score = 89.7 bits (98), Expect = 4e-13
Identities = 106/141 (75%), Gaps = 2/141 (1%)
Strand=Plus/Minus
Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG- 29705
|||||| | || | | ||||||||||| || || ||||||||||| || |||||| |
Sbjct 4049 CCAGCAAAGATGAGGCGCTGCTGATCCGGAGGGATGCCCTCTTTGTCCTG-AATTTTCGC 3991
Query 29706 TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAA 29765
||| ||| |||| | || || || ||||| || | ||| || ||||| || |||||
Sbjct 3990 TTTAACATTTTCAATCGTATCCGATGCCTCTACCTCCAAAGTGATCGTTTTACCCGTTAA 3931
Query 29766 GGTTTTAACAAATATCTGCAT 29786
|||||| ||||| || |||||
Sbjct 3930 GGTTTTTACAAAAATTTGCAT 3910
>seq29780
Length=3062
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631
|| || || | ||| | || || ||||| || ||||||||||||| | ||||||
Sbjct 18 CGAAGGACGAGATGCAAAGTCGACTCTTTCTGTATGTTATAATCCGATAGAGTGCGACCG 77
Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691
|| || || || ||||| ||| | || || | |||||||| || || || || ||||||
Sbjct 78 TCTTCCAGCTGCTTGCCGGCAAAAATTAAGCGCTGCTGATCTGGGGGGATGCCTTCTTTG 137
Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751
|| || | || ||||| |||| | || || || ||| ||||| | ||| ||
Sbjct 138 TCCTGGATCTTCGCCTTGACGTTTTCGATCGTATCCGACGCTTCCACTTCCAAAGTGATC 197
Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| || || || || ||||| || || || |||||
Sbjct 198 GTCTTCCCCGTCAAAGTTTTGACGAAAATTTGCAT 232
>seq73431
Length=1108
Score = 86.0 bits (94), Expect = 5e-12
Identities = 130/185 (70%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 29602 TGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAAT 29661
|| ||||||||||||| | |||||| || || | || ||||||||| | || ||
Sbjct 382 TGGATGTTATAATCCGATAGAGTGCGACCGTCTTCCAACTGCTTGCCAGCAAAAATTAAG 441
Query 29662 CTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACA 29721
|| |||||||| || || || || ||||||| || | || ||||| |||| |
Sbjct 442 CTCTGCTGATCTGGGGGGATGCCTTCTTTGTGCTGGATCTTCGCCTTGACGCTTTCGATC 501
Query 29722 GTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATC 29781
|| || || ||| ||||||| ||| || || || || || || ||||| || || ||
Sbjct 502 GTATCCGACGCTTCCACTTCAAAAGTGATCGTCTTCCCTGTCAAAGTTTTGACGAAAATT 561
Query 29782 TGCAT 29786
|||||
Sbjct 562 TGCAT 566
>seq27460
Length=3287
Score = 84.2 bits (92), Expect = 2e-11
Identities = 107/145 (74%), Gaps = 2/145 (1%)
Strand=Plus/Plus
Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTT 29702
||| || ||| | |||| | ||||||||||||||| || || || ||||| || |||||
Sbjct 2234 TTTACCTGCAAAGATCAGACGTTGCTGATCCGGCGGGATGCCTTCCTTGTCCTG-AATTT 2292
Query 29703 TTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAG 29761
|||| || ||| |||| | || || || ||| || ||||| || || || ||||| |
Sbjct 2293 TTGTCTTCACATTTTCGATGGTATCCGAGGATTCCACCTCAAGCGTGATCGTCTTGCCGG 2352
Query 29762 TTAAGGTTTTAACAAATATCTGCAT 29786
||| || || || || || |||||
Sbjct 2353 TTAGCGTCTTCACGAAGATTTGCAT 2377
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 384616375409541
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |