Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25] 128,401 sequences; 322,334,493 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1065 109 4e-18 seq4775 86.0 5e-11 >seq1065 Length=17194 Score = 109 bits (120), Expect = 4e-18 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 |||||||| | |||||| |||| |||||||||||||| ||||| ||||||| || ||| Sbjct 1616 TTTTTATCCAAACCATATGCAATTGCAGCAGCAGTTGGCTCATTTATAATTCGCAGCACA 1557 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || || |||||| || |||||||| || || || | || ||||| || |||||| Sbjct 1556 TTTAGGCCCGCAATTGCGCCAGCATCTTTCGTTGCCTGCCGCTGGGAATCATTGAAATAT 1497 Query 282452 GCAGGAACAGTAATAACGGCATC 282474 || || || || | || ||||| Sbjct 1496 GCCGGCACCGTGACCACCGCATC 1474 >seq4775 Length=9739 Score = 86.0 bits (94), Expect = 5e-11 Identities = 173/252 (69%), Gaps = 11/252 (4%) Strand=Plus/Plus Query 282614 ACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCA 282673 |||| |||||||| | | ||||||| || ||| | || |||||| ||| ||| Sbjct 735 ACTTCGAATGGCCAGTGCTCCATATCTTTTTTCACAGTGGTATCGTTAAAACCTCGGCCA 794 Query 282674 ATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGC-AGCTTGATATTTGGC 282732 || || ||||| ||||| || | ||||| | ||||| | |||| | | |||||| Sbjct 795 ATCAAACGTTTCGCATCGAATACGGTATTTTTCGGATTTGTGGTGAGCTGGTT-TTTGGC 853 Query 282733 TGCATCTCCAATCAGATGTT---CTGTCTCTGTA---AATGAAACATATGATGGAGTTGT 282786 |||||| ||||||||| | | | | ||| || || | || || ||||| || | Sbjct 854 TGCATCACCAATCAGACGCTCACCAGACTCACTACTGAACGCCACGTACGATGGTGTGAT 913 Query 282787 GCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACA 282846 ||||| || || ||||| || |||||||| || ||||||| | | ||| ||||| Sbjct 914 ACGATTGCCCTGTTCATTGGCGATAATTTCCACACGTCCATTTTTATAGATACCAACACA 973 Query 282847 ACT---AAAAGT 282855 ||| |||||| Sbjct 974 ACTGTAAAAAGT 985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3734326453522626