Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25] 128,401 sequences; 322,334,493 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq29780 120 3e-22 seq65209 102 8e-17 seq14519 93.3 4e-14 seq73431 87.8 2e-12 seq19432 84.2 2e-11 >seq29780 Length=3062 Score = 120 bits (132), Expect = 3e-22 Identities = 114/146 (78%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||| | || ||| |||| || |||||||| || ||||| |||||||||||||| ||| Sbjct 502 TGCATACCAGCGAAAATAAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGAATC 561 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||| | | ||| | |||||||| |||||||| || | |||| ||||||||| Sbjct 562 TTCGCCTTTACGTTCTCGATCGTGTCGGACGGCTCCACTTCCAGAGTGATTGTTTTGCCG 621 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||||||||| || ||||||||||| Sbjct 622 GTCAGAGTTTTAACAAAAATCTGCAT 647 Score = 113 bits (124), Expect = 4e-20 Identities = 146/200 (73%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 || |||||||||||||| || ||||| | || | | ||| ||| || |||||||||| Sbjct 36 GTCGACTCTTTCTGTATGTTATAATC--CGATAGAGTGCGACCGTCTTCCAGCTGCTTGC 93 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || |||| | |||||||| || || ||||||||||| ||||| |||||| || Sbjct 94 CGGCAAAAATTAAGCGCTGCTGATCTGGGGGGATGCCTTCTTTGTCCTGGATCTTCGCCT 153 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | ||| || | | ||||| || | |||| || || || |||| || Sbjct 154 TGACGTTTTCGATCGTATCCGACGCTTCCACTTCCAAAGTGATCGTCTTCCCCGTCAAAG 213 Query 133642 TTTTTACGAAAATCTGCATG 133661 |||| |||||||| |||||| Sbjct 214 TTTTGACGAAAATTTGCATG 233 >seq65209 Length=1292 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || || || || || || || ||||| || ||| ||| |||||| | ||||||||| Sbjct 491 GTCGATTCCTTTTGGATGTTATAATCCGACAAAGTGCGACC-GTCCTCCAACTGCTTGCC 549 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || |||| || || ||||| || |||||||| || || ||||| |||||| ||| Sbjct 550 GGCAAAAATAAGACGTTGCTGATCCGGAGGGATACCCTCTTTGTCCTGGATCTTCGCCTT 609 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| ||||| | | |||||| || | |||| || ||||| |||| || Sbjct 610 AACGTTCTCAATGGTGTCCGATGCCTCCACTTCCAGAGTGATTGTCTTGCCCGTCAACGT 669 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| |||||||||||||| Sbjct 670 TTTGACGAAAATCTGCAT 687 >seq14519 Length=5345 Score = 93.3 bits (102), Expect = 4e-14 Identities = 113/153 (74%), Gaps = 1/153 (1%) Strand=Plus/Minus Query 133513 GCTGC-TTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTG 133571 ||||| || || ||| ||||||| |||||||| || || || ||||| ||||| || | Sbjct 948 GCTGCGTTACCGGCGAAAATGAGGCGCTGCTGATCTGGCGGTATGCCCTCCTTATCCTGG 889 Query 133572 ATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631 ||||| ||| | | ||||| || || | | |||||| |||| || | || ||| Sbjct 888 ATCTTCGCCTTCACATTCTCAATAGTATCCGATGCCTCCACCTCGAGAGTAATTGTCTTG 829 Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCATGGCT 133664 || || || ||||| |||||||||||||| ||| Sbjct 828 CCAGTGAGCGTTTTCACGAAAATCTGCATTGCT 796 >seq73431 Length=1108 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/208 (71%), Gaps = 6/208 (3%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGC 133514 ||||| ||| |||| | ||| || || ||||| | || | | ||| ||| || | | Sbjct 363 ATGTAAGGTCGACTTCTCCTGGATGTTATAATC--CGATAGAGTGCGACCGTCTTCCAAC 420 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| || |||| | | |||||| || || ||||||||||| |||| |||| Sbjct 421 TGCTTGCCAGCAAAAATTAAGCTCTGCTGATCTGGGGGGATGCCTTCTTTGTGCTGGATC 480 Query 133575 TTTTGCTTGA-GCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 || ||||| ||| || | ||| || | | ||||| || | |||| || || || Sbjct 481 TTCGCCTTGACGCT-TTCGATCGTATCCGACGCTTCCACTTCAAAAGTGATCGTCTTCCC 539 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATG 133661 |||| |||||| |||||||| |||||| Sbjct 540 TGTCAAAGTTTTGACGAAAATTTGCATG 567 >seq19432 Length=4349 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 133536 CGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACC 133595 |||||||| || || || |||||||||||||| ||||||| ||| | | ||||| Sbjct 1932 CGCTGCTGATCCGGTGGTATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCAATG 1991 Query 133596 GTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATC 133655 || || | | |||||| || | |||| |||||||| || || ||||| || ||||| Sbjct 1992 GTATCCGATGCCTCCACCTCCAGAGTGATCGTTTTGCCAGTGAGCGTTTTCACATAAATC 2051 Query 133656 TGCATG 133661 |||||| Sbjct 2052 TGCATG 2057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482644903573240