Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25]
128,401 sequences; 322,334,493 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq29780 120 3e-22
seq65209 102 8e-17
seq14519 93.3 4e-14
seq73431 87.8 2e-12
seq19432 84.2 2e-11
>seq29780
Length=3062
Score = 120 bits (132), Expect = 3e-22
Identities = 114/146 (78%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574
||| | || ||| |||| || |||||||| || ||||| |||||||||||||| |||
Sbjct 502 TGCATACCAGCGAAAATAAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGAATC 561
Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634
|| ||| | | ||| | |||||||| |||||||| || | |||| |||||||||
Sbjct 562 TTCGCCTTTACGTTCTCGATCGTGTCGGACGGCTCCACTTCCAGAGTGATTGTTTTGCCG 621
Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660
||||||||||| || |||||||||||
Sbjct 622 GTCAGAGTTTTAACAAAAATCTGCAT 647
Score = 113 bits (124), Expect = 4e-20
Identities = 146/200 (73%), Gaps = 4/200 (2%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521
|| |||||||||||||| || ||||| | || | | ||| ||| || ||||||||||
Sbjct 36 GTCGACTCTTTCTGTATGTTATAATC--CGATAGAGTGCGACCGTCTTCCAGCTGCTTGC 93
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| || |||| | |||||||| || || ||||||||||| ||||| |||||| ||
Sbjct 94 CGGCAAAAATTAAGCGCTGCTGATCTGGGGGGATGCCTTCTTTGTCCTGGATCTTCGCCT 153
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
||| | || | ||| || | | ||||| || | |||| || || || |||| ||
Sbjct 154 TGACGTTTTCGATCGTATCCGACGCTTCCACTTCCAAAGTGATCGTCTTCCCCGTCAAAG 213
Query 133642 TTTTTACGAAAATCTGCATG 133661
|||| |||||||| ||||||
Sbjct 214 TTTTGACGAAAATTTGCATG 233
>seq65209
Length=1292
Score = 102 bits (112), Expect = 8e-17
Identities = 143/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|| || || || || || || ||||| || ||| ||| |||||| | |||||||||
Sbjct 491 GTCGATTCCTTTTGGATGTTATAATCCGACAAAGTGCGACC-GTCCTCCAACTGCTTGCC 549
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
|| |||| || || ||||| || |||||||| || || ||||| |||||| |||
Sbjct 550 GGCAAAAATAAGACGTTGCTGATCCGGAGGGATACCCTCTTTGTCCTGGATCTTCGCCTT 609
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
| | ||||| ||||| | | |||||| || | |||| || ||||| |||| ||
Sbjct 610 AACGTTCTCAATGGTGTCCGATGCCTCCACTTCCAGAGTGATTGTCTTGCCCGTCAACGT 669
Query 133643 TTTTACGAAAATCTGCAT 133660
||| ||||||||||||||
Sbjct 670 TTTGACGAAAATCTGCAT 687
>seq14519
Length=5345
Score = 93.3 bits (102), Expect = 4e-14
Identities = 113/153 (74%), Gaps = 1/153 (1%)
Strand=Plus/Minus
Query 133513 GCTGC-TTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTG 133571
||||| || || ||| ||||||| |||||||| || || || ||||| ||||| || |
Sbjct 948 GCTGCGTTACCGGCGAAAATGAGGCGCTGCTGATCTGGCGGTATGCCCTCCTTATCCTGG 889
Query 133572 ATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631
||||| ||| | | ||||| || || | | |||||| |||| || | || |||
Sbjct 888 ATCTTCGCCTTCACATTCTCAATAGTATCCGATGCCTCCACCTCGAGAGTAATTGTCTTG 829
Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCATGGCT 133664
|| || || ||||| |||||||||||||| |||
Sbjct 828 CCAGTGAGCGTTTTCACGAAAATCTGCATTGCT 796
>seq73431
Length=1108
Score = 87.8 bits (96), Expect = 2e-12
Identities = 147/208 (71%), Gaps = 6/208 (3%)
Strand=Plus/Plus
Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGC 133514
||||| ||| |||| | ||| || || ||||| | || | | ||| ||| || | |
Sbjct 363 ATGTAAGGTCGACTTCTCCTGGATGTTATAATC--CGATAGAGTGCGACCGTCTTCCAAC 420
Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574
|||||||| || |||| | | |||||| || || ||||||||||| |||| ||||
Sbjct 421 TGCTTGCCAGCAAAAATTAAGCTCTGCTGATCTGGGGGGATGCCTTCTTTGTGCTGGATC 480
Query 133575 TTTTGCTTGA-GCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633
|| ||||| ||| || | ||| || | | ||||| || | |||| || || ||
Sbjct 481 TTCGCCTTGACGCT-TTCGATCGTATCCGACGCTTCCACTTCAAAAGTGATCGTCTTCCC 539
Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATG 133661
|||| |||||| |||||||| ||||||
Sbjct 540 TGTCAAAGTTTTGACGAAAATTTGCATG 567
>seq19432
Length=4349
Score = 84.2 bits (92), Expect = 2e-11
Identities = 94/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 133536 CGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACC 133595
|||||||| || || || |||||||||||||| ||||||| ||| | | |||||
Sbjct 1932 CGCTGCTGATCCGGTGGTATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCAATG 1991
Query 133596 GTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATC 133655
|| || | | |||||| || | |||| |||||||| || || ||||| || |||||
Sbjct 1992 GTATCCGATGCCTCCACCTCCAGAGTGATCGTTTTGCCAGTGAGCGTTTTCACATAAATC 2051
Query 133656 TGCATG 133661
||||||
Sbjct 2052 TGCATG 2057
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 482644903573240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |