Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25] 128,401 sequences; 322,334,493 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq41068 86.0 2e-13 seq29814 80.6 8e-12 seq28565 80.6 8e-12 >seq41068 Length=2228 Score = 86.0 bits (94), Expect = 2e-13 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 ||||||||| |||||||| |||||||||||||||||||||| ||||||||| ||||| Sbjct 714 TAGCTCAGTCGGGAGAGCGTTAGACTGAAGATCTAAAGGTCGCTGGTTCAATCCCGG 658 >seq29814 Length=3059 Score = 80.6 bits (88), Expect = 8e-12 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 ||||||||| |||||||| |||||||||||||||||||||| | ||||||| ||||| Sbjct 1959 TAGCTCAGTCGGGAGAGCGTTAGACTGAAGATCTAAAGGTCGCCGGTTCAATCCCGG 2015 >seq28565 Length=3173 Score = 80.6 bits (88), Expect = 8e-12 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 ||||||||| |||||||| |||||||||||||||||||||| | ||||||| ||||| Sbjct 2066 TAGCTCAGTCGGGAGAGCGTTAGACTGAAGATCTAAAGGTCGCCGGTTCAATCCCGG 2122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15827341044645