Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25]
128,401 sequences; 322,334,493 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq29780 107 2e-18
seq14519 87.8 2e-12
seq73431 84.2 2e-11
>seq29780
Length=3062
Score = 107 bits (118), Expect = 2e-18
Identities = 139/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
||| || || ||||| ||||| | | || || |||| ||||||||||| || |||||
Sbjct 41 CTCTTTCTGTATGTTATAATCCGATAGAGTGCGACCGTCTTCCAGCTGCTTGCCGGCAAA 100
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|| || |||||||| || | || | || || |||||| |||||| ||| | |
Sbjct 101 AATTAAGCGCTGCTGATCTGGGGGGATGCCTTCTTTGTCCTGGATCTTCGCCTTGACGTT 160
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | | ||| || || |||||| |||| |||||||| || |||||||||||||| ||
Sbjct 161 TTCGATCGTATCCGACGCTTCCACTTCCAAAGTGATCGTCTTCCCCGTCAAAGTTTTGAC 220
Query 35725 AAATATCTGCAT 35736
|| || |||||
Sbjct 221 GAAAATTTGCAT 232
>seq14519
Length=5345
Score = 87.8 bits (96), Expect = 2e-12
Identities = 111/149 (74%), Gaps = 8/149 (5%)
Strand=Plus/Minus
Query 35592 GCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCT 35651
||| ||| ||||| || | |||||||| |||| ||| | || ||| |||||| ||| |
Sbjct 4054 GCTCACCAGCAAAGATGAGGCGCTGCTGATCCGGAGGGATGCCCTCTTTGTCC-TGAATT 3996
Query 35652 TTTGCTTCAG-AGTTGCCACCGTGTCGCTCGATTCC---ACCTCCACCGTGATCGTTTTA 35707
|| |||| | | || | | ||| || |||| || ||||||| ||||||||||||
Sbjct 3995 TTCGCTTTAACATTTTCAATCGTATC---CGATGCCTCTACCTCCAAAGTGATCGTTTTA 3939
Query 35708 CCCGTCAAAGTTTTCACAAATATCTGCAT 35736
||||| || ||||| ||||| || |||||
Sbjct 3938 CCCGTTAAGGTTTTTACAAAAATTTGCAT 3910
Score = 86.0 bits (94), Expect = 6e-12
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 35600 GCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTC 35659
||||| || | ||||||||| |||| |||| | |||||||||| ||||| |||
Sbjct 4616 GCAAAGATAAGCCGCTGCTGATCCGGTGGAATACCCTCCTTGTCCTGAATCTTCGCTTTC 4557
Query 35660 AGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTT 35719
| | || | | || || || ||| || |||| |||||| ||||| || ||||||||
Sbjct 4556 ACATTTTCGATGGTATCTGACGCTTCGACTTCCAGCGTGATGGTTTTGCCAGTCAAAGTC 4497
Query 35720 TTCACAAATATCTGCAT 35736
|| || |||||||||||
Sbjct 4496 TTGACGAATATCTGCAT 4480
>seq73431
Length=1108
Score = 84.2 bits (92), Expect = 2e-11
Identities = 141/204 (69%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 35533 ATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTG 35592
|||||| || || || || ||||| ||||| | | || || |||| |||| |||
Sbjct 363 ATGTAAGGTCGACTTCTCCTGGATGTTATAATCCGATAGAGTGCGACCGTCTTCCAACTG 422
Query 35593 CTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTT 35652
||| || ||||| || || | |||||| || | || | || || |||| | ||||||
Sbjct 423 CTTGCCAGCAAAAATTAAGCTCTGCTGATCTGGGGGGATGCCTTCTTTGTGCTGGATCTT 482
Query 35653 TTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712
||| | || | | ||| || || |||||| || | |||||||| || || ||
Sbjct 483 CGCCTTGACGCTTTCGATCGTATCCGACGCTTCCACTTCAAAAGTGATCGTCTTCCCTGT 542
Query 35713 CAAAGTTTTCACAAATATCTGCAT 35736
||||||||| || || || |||||
Sbjct 543 CAAAGTTTTGACGAAAATTTGCAT 566
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450070070637080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |