Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25] 128,401 sequences; 322,334,493 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq29780 107 2e-18 seq14519 87.8 2e-12 seq73431 84.2 2e-11 >seq29780 Length=3062 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || ||||| ||||| | | || || |||| ||||||||||| || ||||| Sbjct 41 CTCTTTCTGTATGTTATAATCCGATAGAGTGCGACCGTCTTCCAGCTGCTTGCCGGCAAA 100 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || || |||||||| || | || | || || |||||| |||||| ||| | | Sbjct 101 AATTAAGCGCTGCTGATCTGGGGGGATGCCTTCTTTGTCCTGGATCTTCGCCTTGACGTT 160 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||| || || |||||| |||| |||||||| || |||||||||||||| || Sbjct 161 TTCGATCGTATCCGACGCTTCCACTTCCAAAGTGATCGTCTTCCCCGTCAAAGTTTTGAC 220 Query 35725 AAATATCTGCAT 35736 || || ||||| Sbjct 221 GAAAATTTGCAT 232 >seq14519 Length=5345 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/149 (74%), Gaps = 8/149 (5%) Strand=Plus/Minus Query 35592 GCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCT 35651 ||| ||| ||||| || | |||||||| |||| ||| | || ||| |||||| ||| | Sbjct 4054 GCTCACCAGCAAAGATGAGGCGCTGCTGATCCGGAGGGATGCCCTCTTTGTCC-TGAATT 3996 Query 35652 TTTGCTTCAG-AGTTGCCACCGTGTCGCTCGATTCC---ACCTCCACCGTGATCGTTTTA 35707 || |||| | | || | | ||| || |||| || ||||||| |||||||||||| Sbjct 3995 TTCGCTTTAACATTTTCAATCGTATC---CGATGCCTCTACCTCCAAAGTGATCGTTTTA 3939 Query 35708 CCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| || ||||| ||||| || ||||| Sbjct 3938 CCCGTTAAGGTTTTTACAAAAATTTGCAT 3910 Score = 86.0 bits (94), Expect = 6e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 35600 GCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTC 35659 ||||| || | ||||||||| |||| |||| | |||||||||| ||||| ||| Sbjct 4616 GCAAAGATAAGCCGCTGCTGATCCGGTGGAATACCCTCCTTGTCCTGAATCTTCGCTTTC 4557 Query 35660 AGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTT 35719 | | || | | || || || ||| || |||| |||||| ||||| || |||||||| Sbjct 4556 ACATTTTCGATGGTATCTGACGCTTCGACTTCCAGCGTGATGGTTTTGCCAGTCAAAGTC 4497 Query 35720 TTCACAAATATCTGCAT 35736 || || ||||||||||| Sbjct 4496 TTGACGAATATCTGCAT 4480 >seq73431 Length=1108 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 35533 ATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTG 35592 |||||| || || || || ||||| ||||| | | || || |||| |||| ||| Sbjct 363 ATGTAAGGTCGACTTCTCCTGGATGTTATAATCCGATAGAGTGCGACCGTCTTCCAACTG 422 Query 35593 CTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTT 35652 ||| || ||||| || || | |||||| || | || | || || |||| | |||||| Sbjct 423 CTTGCCAGCAAAAATTAAGCTCTGCTGATCTGGGGGGATGCCTTCTTTGTGCTGGATCTT 482 Query 35653 TTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712 ||| | || | | ||| || || |||||| || | |||||||| || || || Sbjct 483 CGCCTTGACGCTTTCGATCGTATCCGACGCTTCCACTTCAAAAGTGATCGTCTTCCCTGT 542 Query 35713 CAAAGTTTTCACAAATATCTGCAT 35736 ||||||||| || || || ||||| Sbjct 543 CAAAGTTTTGACGAAAATTTGCAT 566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450070070637080