Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25] 128,401 sequences; 322,334,493 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq29780 120 3e-22 seq73431 111 2e-19 seq65209 105 7e-18 seq14519 86.0 6e-12 seq82153 82.4 8e-11 >seq29780 Length=3062 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 ||||| || | || || || || || ||||| || || | ||| || ||| || Sbjct 24 ACGAGATGCAAAGTCGACTCTTTCTGTATGTTATAATCCGATAGAGTGCGACCGTCTTCC 83 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||| |||||||| || ||||||||||| || || ||||||||||| || || Sbjct 84 AGCTGCTTGCCGGCAAAAATTAAGCGCTGCTGATCTGGGGGGATGCCTTCTTTGTCCTGG 143 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || ||||| || | || || |||| |||||| || | ||| || || || Sbjct 144 ATCTTCGCCTTGACGTTTTCGATCGTATCCGACGCTTCCACTTCCAAAGTGATCGTCTTC 203 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || |||||||| |||||||||||||| Sbjct 204 CCCGTCAAAGTTTTGACGAAAATTTGCAT 232 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || || ||||| | |||||||||||| || || |||||||| || || ||||| || Sbjct 508 CCAGCGAAAATAAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGAATCTTCGCC 567 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | |||||||||| ||||| || ||||| || ||||| ||||| | | Sbjct 568 TTTACGTTCTCGATCGTGTCGGACGGCTCCACTTCCAGAGTGATTGTTTTGCCGGTCAGA 627 Query 134694 GTTTTAACGAAAATTTGCAT 134713 |||||||| ||||| ||||| Sbjct 628 GTTTTAACAAAAATCTGCAT 647 >seq73431 Length=1108 Score = 111 bits (122), Expect = 2e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 ||||| |||| || || | || || ||||| || || | ||| || ||| || Sbjct 358 ACGAGATGTAAGGTCGACTTCTCCTGGATGTTATAATCCGATAGAGTGCGACCGTCTTCC 417 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 | ||| ||||| |||||||| || | ||||||||| || || ||||||||||| | || Sbjct 418 AACTGCTTGCCAGCAAAAATTAAGCTCTGCTGATCTGGGGGGATGCCTTCTTTGTGCTGG 477 Query 134625 ATTTTTTGTTTGACCGCGTCCAAT-GTGTCGGACGATTCCACGTCGAGAGTAATGGTTTT 134683 || || |||| ||| | | || || || |||| |||||| || | ||| || || || Sbjct 478 ATCTTCGCCTTGA-CGCTTTCGATCGTATCCGACGCTTCCACTTCAAAAGTGATCGTCTT 536 Query 134684 ACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || |||||||| |||||||||||||| Sbjct 537 CCCTGTCAAAGTTTTGACGAAAATTTGCAT 566 >seq65209 Length=1292 Score = 105 bits (116), Expect = 7e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGT-CGCCAACGGTGTGAGAGTCGTC 134563 ||||| || | || ||||||||||| ||||| || | || ||| ||| || ||| || Sbjct 479 ACGAGATGCAAAGTCGATTCCTTTTGGATGTTATAATCCGACAA-AGTGCGACCGTCCTC 537 Query 134564 GAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTG 134623 | ||| ||||| |||||||| | ||| |||||||| || || || || ||||| || || Sbjct 538 CAACTGCTTGCCGGCAAAAATAAGACGTTGCTGATCCGGAGGGATACCCTCTTTGTCCTG 597 Query 134624 AATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTT 134683 || || || || || | ||||| || | ||||| || ||||| || || || Sbjct 598 GATCTTCGCCTTAACGTTCTCAATGGTGTCCGATGCCTCCACTTCCAGAGTGATTGTCTT 657 Query 134684 ACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| |||||||| ||||| Sbjct 658 GCCCGTCAACGTTTTGACGAAAATCTGCAT 687 Score = 95.1 bits (104), Expect = 1e-14 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || ||||| || | ||||||||||| || || ||||||||||| || || || ||| Sbjct 961 CCAGCAAAGATAAGTCGCTGCTGATCTGGGGGAATGCCTTCTTTGTCCTGGATCTTTGCC 1020 Query 134634 TTGACCGCGTCCAAT-GTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAA 134692 |||| || | |||| |||||||||| ||||| || | || || || || ||||| | Sbjct 1021 TTGA-CGTTTTCAATCGTGTCGGACGCCTCCACCTCCAATGTGATTGTCTTGCCGGTGAG 1079 Query 134693 AGTTTTAACGAAAATTTGCAT 134713 ||| || |||||||||||||| Sbjct 1080 AGTCTTCACGAAAATTTGCAT 1100 >seq14519 Length=5345 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || ||||| || | ||||||||||| || || ||||| ||||| || |||||||| | Sbjct 4049 CCAGCAAAGATGAGGCGCTGCTGATCCGGAGGGATGCCCTCTTTGTCCTGAATTTTCGCT 3990 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | || || || | || || || | ||| || |||||||| ||||| Sbjct 3989 TTAACATTTTCAATCGTATCCGATGCCTCTACCTCCAAAGTGATCGTTTTACCCGTTAAG 3930 Query 134694 GTTTTAACGAAAATTTGCAT 134713 ||||| || ||||||||||| Sbjct 3929 GTTTTTACAAAAATTTGCAT 3910 >seq82153 Length=950 Score = 82.4 bits (90), Expect = 8e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 134581 AAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCG 134640 |||| |||||||||||||| || || |||||||| ||||| ||||| || ||| || Sbjct 665 AAATAAAACGCTGCTGATCAGGAGGAATGCCTTCCTTTTCCTGAATCTTCGCTTTTACAT 724 Query 134641 CGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAA 134700 | | ||||| |||| ||||| || ||| || ||||| ||||| | | |||||| Sbjct 725 CCACGGTCGTGTCAGACGGCTCCACTTCCAGAACGATTGTTTTGCCGGTAAGACTTTTAA 784 Query 134701 CGAAAATT 134708 | |||||| Sbjct 785 CAAAAATT 792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504587229250520