Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25] 128,401 sequences; 322,334,493 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq65209 141 3e-28 seq27037 129 2e-24 seq29780 127 6e-24 seq55198 122 3e-22 seq14519 122 3e-22 seq1065 116 1e-20 seq27460 111 5e-19 seq4775 104 7e-17 seq76917 100 9e-16 seq82153 91.5 4e-13 >seq65209 Length=1292 Score = 141 bits (156), Expect = 3e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 |||||| || | | || || ||||| | ||| || || ||||| || |||||||| || Sbjct 460 ACCACCGCGAAGGCGAAGGACGAGATGCAAAGTCGATTCCTTTTGGATGTTATAATCCGA 519 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 || || || || || || | || || || ||||| || |||||||||||||| ||||| Sbjct 520 CAAAGTGCGACCGTCCTCCAACTGCTTGCCGGCAAAAATAAGACGTTGCTGATCCGGAGG 579 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 || || ||||| ||||| || || || || || || ||||| | || |||| || || Sbjct 580 GATACCCTCTTTGTCCTGGATCTTCGCCTTAACGTTCTCAATGGTGTCCGATGCCTCCAC 639 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || | |||||| || || | ||||| || ||||||||||| Sbjct 640 TTCCAGAGTGATTGTCTTGCCCGTCAACGTTTTGACGAAAATCTGCAT 687 Score = 104 bits (114), Expect = 7e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 ||||||||||| || || |||||||| || ||||| |||||||| ||||| || || || Sbjct 961 CCAGCAAAGATAAGTCGCTGCTGATCTGGGGGAATGCCTTCTTTGTCCTGGATCTTTGCC 1020 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || || || ||||||| || || | || || || | ||| | |||||| ||||| || Sbjct 1021 TTGACGTTTTCAATCGTGTCGGACGCCTCCACCTCCAATGTGATTGTCTTGCCGGTGAGA 1080 Query 140718 GTTTTTACAAAAATCTGCAT 140737 || || || ||||| ||||| Sbjct 1081 GTCTTCACGAAAATTTGCAT 1100 >seq27037 Length=3336 Score = 129 bits (142), Expect = 2e-24 Identities = 145/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 130740 CCTCCAAGCATAACAAAATCAGCTCCTGCTCCAAATGCTTTCGCAATATCCCCGGGAGAT 130799 ||||||| ||| || ||||||||||| || ||||| |||||||||| ||| |||||| | Sbjct 2318 CCTCCAATCATCACGAAATCAGCTCCAGCACCAAAAGCTTTCGCAACATCGCCGGGATTT 2377 Query 130800 TTACAACCCCCATCAGCAATAACATGTCCATTTAATCCATGTGCCGCATCAGCACACTCT 130859 | || || |||||| || ||||| || || | ||||| | ||||||||||| ||| Sbjct 2378 GTGCATCCGCCATCACTCATTACATGACCGTTCAGGCCATGCGAGGCATCAGCACATTCT 2437 Query 130860 GAAATAGCAGAAAGTTGTGGATATCCAACTCCAGTTACTTTTCTTGTAGTACAAACAGCA 130919 | ||| || || || ||||||||||||| | ||| | ||| ||||| || | | Sbjct 2438 ATTACGGCACTCAGCTGAGGGTATCCAACTCCAGCTTTTTTCCGTGTTGTACATACTGAA 2497 Query 130920 CCTGGACCAATACC 130933 || |||||||| || Sbjct 2498 CCAGGACCAATGCC 2511 >seq29780 Length=3062 Score = 127 bits (140), Expect = 6e-24 Identities = 112/140 (80%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 ||||| || || ||||| ||||||||||||||||| ||||| || |||||||| || || Sbjct 508 CCAGCGAAAATAAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGAATCTTCGCC 567 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 ||||| || || |||| || || || || ||||| || || | ||| || ||||| || Sbjct 568 TTTACGTTCTCGATCGTGTCGGACGGCTCCACTTCCAGAGTGATTGTTTTGCCGGTCAGA 627 Query 140718 GTTTTTACAAAAATCTGCAT 140737 ||||| |||||||||||||| Sbjct 628 GTTTTAACAAAAATCTGCAT 647 >seq55198 Length=1598 Score = 122 bits (134), Expect = 3e-22 Identities = 169/234 (72%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 349519 AAAACAATTTTTACCC--GAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATT 349576 |||| || ||| ||| |||||||||||| | ||||||||| |||||||||||||| Sbjct 1245 AAAAAAACGTTTGCCCCGGAAGAAATTTCAGCGATGGTTTTAACGAAAATGAAGGAAATC 1304 Query 349577 GCTGAAGCATATTTAGGTGAAACAGT--AACTGATGCTGTTATTACTGTACCAGCCTATT 349634 || || |||||| | || ||| || ||| | ||||| || || || || || || | Sbjct 1305 GCAGAGGCATATATTGGGAAAAAGGTGGAAC--ACGCTGTGATCACAGTGCCGGCTTACT 1362 Query 349635 TTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTC 349694 ||| |||||| || || || || || |||||||| | || || || |||||||| Sbjct 1363 TTACTGATGCGCAACGGCAGGCTACGAAGGATGCTGGAACGATCGCCGGCCTAAATGTTG 1422 Query 349695 TAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAA 349748 | | || || || ||||| || || || || || || ||||| || ||||||| Sbjct 1423 TCCGTATTATCAACGAACCAACGGCCGCCGCTATCGCTTATGGTCTAGATAAAA 1476 Score = 91.5 bits (100), Expect = 4e-13 Identities = 139/194 (72%), Gaps = 8/194 (4%) Strand=Plus/Plus Query 349231 TTGTGTTGCTGTTTGGCAAAATGATCGTGTAGAAATAATTGCAAATGATCAAGGTAACAG 349290 |||||||| | | | |||||| ||||| ||||| || || ||||| || || || | Sbjct 630 TTGTGTTGGTATCTATAAAAATGGACGTGTGGAAATTATCGCCAATGAACAGGGCAATCG 689 Query 349291 AACAACGCCATCATACGTTGCATT---TACCGAAACTG---AGCGTATGATTGGTGATTC 349344 || || || || ||||| || || || || ||| ||||| ||||||||||| | Sbjct 690 AATCACACCGTCGTACGTGGCGTTCAGTAGTGAGTCTGGTGAGCGTCTGATTGGTGATGC 749 Query 349345 TGCAAAAAATCAAGCT-GCTGCTAATCCAAAAAATACGGTTTTTGATGCTAAGCGACTTA 349403 || ||||| | |||| | | ||||| |||||||| ||||| ||||| ||||| | | Sbjct 750 AGCCAAAAA-CCAGCTCACCACAAATCCGAAAAATACCGTTTTCGATGCGAAGCGTTTGA 808 Query 349404 TTGGTAGAAGTTTT 349417 |||| || ||||| Sbjct 809 TTGGCCGAGGTTTT 822 >seq14519 Length=5345 Score = 122 bits (134), Expect = 3e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 ||||||||||| || || |||||||| ||||| || || ||||| ||||||||||| ||| Sbjct 4049 CCAGCAAAGATGAGGCGCTGCTGATCCGGAGGGATGCCCTCTTTGTCCTGAATTTTCGCT 3990 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| ||||||| ||| |||| || || || | || | || || || |||| Sbjct 3989 TTAACATTTTCAATCGTATCCGATGCCTCTACCTCCAAAGTGATCGTTTTACCCGTTAAG 3930 Query 140718 GTTTTTACAAAAATCTGCAT 140737 |||||||||||||| ||||| Sbjct 3929 GTTTTTACAAAAATTTGCAT 3910 Score = 104 bits (114), Expect = 7e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 ||||||||||| || || |||||||| || ||||| || || || |||||||| || ||| Sbjct 5108 CCAGCAAAGATAAGCCGCTGCTGATCCGGTGGAATACCCTCCTTGTCCTGAATCTTCGCT 5049 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| || || | ||| |||| || ||||| || |||| || || || || || Sbjct 5048 TTCACATTCTCGATGGTATCTGATGCCTCGACTTCCAGCGTAATGGTTTTGCCAGTCAGA 4989 Query 140718 GTTTTTACAAAAATCTGCAT 140737 || || || || |||||||| Sbjct 4988 GTCTTCACGAAGATCTGCAT 4969 Score = 102 bits (112), Expect = 2e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || || || || || || || |||||||| || || || || || |||||||| || || Sbjct 942 TTACCGGCGAAAATGAGGCGCTGCTGATCTGGCGGTATGCCCTCCTTATCCTGGATCTTC 883 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 || || ||||| ||||| | ||| |||| || || || || |||| |||||| || || Sbjct 882 GCCTTCACATTCTCAATAGTATCCGATGCCTCCACCTCGAGAGTAATTGTCTTGCCAGTG 823 Query 140715 AGTGTTTTTACAAAAATCTGCATT 140738 || ||||| || |||||||||||| Sbjct 822 AGCGTTTTCACGAAAATCTGCATT 799 >seq1065 Length=17194 Score = 116 bits (128), Expect = 1e-20 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 349607 GATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGAT 349666 ||||| || | || || || || ||||| |||||| ||||||| ||||| |||||| Sbjct 1474 GATGCGGTGGTCACGGTGCCGGCATATTTCAATGATTCCCAGCGGCAGGCAACGAAAGAT 1533 Query 349667 GCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCA 349726 |||||| |||||||| ||||||| || |||| || ||||| || |||||||| ||| Sbjct 1534 GCTGGCGCAATTGCGGGCCTAAATGTGCTGCGAATTATAAATGAGCCAACTGCTGCTGCA 1593 Query 349727 ATTGCATATGGGCTTGATAAAA 349748 ||||||||||| | ||||||| Sbjct 1594 ATTGCATATGGTTTGGATAAAA 1615 Score = 91.5 bits (100), Expect = 4e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 349282 AGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACTGAGCGTATGATTGGTGA 349341 ||||||| | || ||||||||||||||||||||||| || || |||||| |||||||||| Sbjct 10011 AGGTAACCGTACGACGCCATCATACGTTGCATTTACGGACACCGAGCGTCTGATTGGTGA 10070 Query 349342 TTCTGCAAAAAATCA 349356 | | || |||||||| Sbjct 10071 TGCGGCGAAAAATCA 10085 Score = 91.5 bits (100), Expect = 4e-13 Identities = 179/261 (69%), Gaps = 3/261 (1%) Strand=Plus/Plus Query 349497 AGGTTGAATATAAAGGTGA-ACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTT 349555 |||| ||||| || || || || || || ||| || || ||||| || || ||||| Sbjct 10313 AGGTGGAATACAAGGGCGAGACGAAGACC-TTTACGCCGGAGGAAATCTCCTCGATGGTA 10371 Query 349556 TTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTT 349615 | | || |||||||| | || || ||||| || || | ||| | ||||| || Sbjct 10372 CTGATCAAGATGAAGGAGACGGCCGAGGCATACTTGGGGCGCAAAGTGAAGGATGCAGTG 10431 Query 349616 ATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGC 349675 || || ||||||||||| || || || | || || || || |||||||| ||| Sbjct 10432 ATCACGGTACCAGCCTACTTCAACGACTCACAACGACAGGCTACCAAAGATGCGGGCGCA 10491 Query 349676 ATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATAT 349735 || |||| | ||||| || | || || || ||||| ||||| || || ||||| ||| Sbjct 10492 ATCTCGGGCCTTAATGTGCTGCGTATCATAAACGAACCTACTGCAGCTGCCATTGCGTAT 10551 Query 349736 GGGCTTGATAAAATGAGTGAC 349756 || | || |||| | ||||| Sbjct 10552 GGATTGGACAAAAAG-GTGAC 10571 Score = 86.0 bits (94), Expect = 2e-11 Identities = 124/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 350502 CAATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAAT 350561 || || | || | ||||||||||||||| || || || |||||| ||||| ||| Sbjct 12264 CATTTTAGGTTTATGAAGGTGAACGTGCGATGACAAAGGACAATAATTTGCTTGGCAAAT 12323 Query 350562 TTACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCG 350621 || || | ||||||||| |||| | ||||| || ||||| |||||| |||| | Sbjct 12324 TTGAGCTCTCGGGGATTCCACCAGCGCCTCGTGGAGTGCCACAGATCGAAGTCACTTTTG 12383 Query 350622 ATATTGATTCAAATGGTATTTTAAATGTTACCGCAGTTGAAAAATCAAGTGGTAA 350676 |||| || |||| ||||| | ||||| | ||| || ||||||| ||| || Sbjct 12384 ATATCGACGCAAACGGTATCCTGAATGTCTCAGCACAGGACAAATCAACTGGCAA 12438 >seq27460 Length=3287 Score = 111 bits (122), Expect = 5e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 140594 TTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTT 140653 ||| || |||||||| |||||||||||||| || || || ||||| || ||||||||||| Sbjct 2234 TTTACCTGCAAAGATCAGACGTTGCTGATCCGGCGGGATGCCTTCCTTGTCCTGAATTTT 2293 Query 140654 AGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713 | || ||||| || || | ||| || | ||| || ||||| || | ||||| ||||| Sbjct 2294 TGTCTTCACATTTTCGATGGTATCCGAGGATTCCACCTCAAGCGTGATCGTCTTGCCGGT 2353 Query 140714 TAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || || || || ||||| Sbjct 2354 TAGCGTCTTCACGAAGATTTGCAT 2377 >seq4775 Length=9739 Score = 104 bits (114), Expect = 7e-17 Identities = 165/234 (71%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 349519 AAAACAATTTTTACCC--GAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATT 349576 |||| || ||| ||| || ||||||||| | ||||| ||| |||||||||||||| Sbjct 354 AAAAAAACGTTTGCCCCGGAGGAAATTTCAGCGATGGTCTTAACGAAAATGAAGGAAATC 295 Query 349577 GCTGAAGCATATTTAGG--TGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATT 349634 || ||||||||| | || ||| | ||| | || || || || || || || || | Sbjct 294 GCAGAAGCATATATCGGGAAGAAGGTGGAAC--ACGCCGTGATCACAGTGCCGGCATACT 237 Query 349635 TTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTC 349694 ||| |||||| || || || || || |||||||| | || || || |||| ||| Sbjct 236 TTACTGATGCGCAACGGCAGGCTACGAAGGATGCTGGAACGATCGCCGGCCTAAACGTTG 177 Query 349695 TAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAA 349748 | | || || || ||||| || || || || || || ||||| || ||||||| Sbjct 176 TCCGTATTATCAACGAACCAACGGCCGCCGCTATCGCTTATGGTCTAGATAAAA 123 >seq76917 Length=1040 Score = 100 bits (110), Expect = 9e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || || ||||| || ||||||||||| || ||||| |||||||| |||||||| || || Sbjct 407 CCTGCGAAGATAAGCCGTTGCTGATCCGGTGGAATACCTTCTTTGTCCTGAATCTTCGCC 348 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || || || || || | ||||||| ||||| || ||||| | || || ||||| | Sbjct 347 TTCACGTTCTCGATGGTGTCAGATGCCTCAACCTCCAGTGTGATGGTTTTACCGGTCAAA 288 Query 140718 GTTTTTACAAAAATCTGCAT 140737 || || || || |||||||| Sbjct 287 GTCTTCACGAAGATCTGCAT 268 >seq82153 Length=950 Score = 91.5 bits (100), Expect = 4e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 140612 ACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAAT 140671 ||| ||||||||||||||||| ||||| || |||||||| || |||||||||| | | Sbjct 672 ACGCTGCTGATCAGGAGGAATGCCTTCCTTTTCCTGAATCTTCGCTTTTACATCCACGGT 731 Query 140672 CGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAAT 140731 || ||||| || || ||||| || | ||| || ||||| || |||| |||||||| Sbjct 732 CGTGTCAGACGGCTCCACTTCCAGAACGATTGTTTTGCCGGTAAGACTTTTAACAAAAAT 791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1512761597691003