Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25] 128,401 sequences; 322,334,493 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq65209 158 1e-33 seq27460 132 5e-26 seq29780 125 8e-24 seq14519 114 1e-20 seq30912 113 5e-20 seq32511 109 6e-19 seq73431 104 3e-17 seq19432 100 3e-16 seq76917 95.1 1e-14 seq97776 89.7 6e-13 >seq65209 Length=1292 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || ||||| ||| | || |||||||| || ||||| || || ||| || Sbjct 687 ATGCAGATTTTCGTCAAAACGTTGACGGGCAAGACAATCACTCTGGAAGTGGAGGCATCG 628 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||||| || || |||||||| ||||| || ||||| || ||| Sbjct 627 GACACCATTGAGAACGTTAAGGCGAAGATCCAGGACAAAGAGGGTATCCCTCCGGATCAG 568 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| |||||||| || ||||| | ||||| | ||| || | | || ||||| Sbjct 567 CAACGTCTTATTTTTGCCGGCAAGCAGTTGGAGGACGGTCGCACTTTGTCGGATTATAAC 508 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||||||||| ||| | ||||| ||| | || ||||||||||| Sbjct 507 ATCCAAAAGGAATCGACTTTGCATCTCGTCCTTCGCCTTCGCGGTGG 461 Score = 107 bits (118), Expect = 2e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || ||||| || ||||||||||| || || | ||||| ||| | Sbjct 1100 ATGCAAATTTTCGTGAAGACTCTCACCGGCAAGACAATCACATTGGAGGTGGAGGCGTCC 1041 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| | ||||| || || |||||||| || || ||||| ||||| ||| Sbjct 1040 GACACGATTGAAAACGTCAAGGCAAAGATCCAGGACAAAGAAGGCATTCCCCCAGATCAG 981 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACT 27554 ||||| || || |||||||||| ||| || Sbjct 980 CAGCGACTTATCTTTGCTGGTATGCACCT 952 >seq27460 Length=3287 Score = 132 bits (146), Expect = 5e-26 Identities = 115/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || |||||||| ||||||||||| || || |||||||| || || Sbjct 2377 ATGCAAATCTTCGTGAAGACGCTAACCGGCAAGACGATCACGCTTGAGGTGGAATCCTCG 2318 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | |||| ||||| | ||||||||||||||||| || || || || || ||| Sbjct 2317 GATACCATCGAAAATGTGAAGACAAAAATTCAGGACAAGGAAGGCATCCCGCCGGATCAG 2258 Query 27526 CAGCGTCTAATTTTTGCTGGTAA 27548 || ||||| || ||||| ||||| Sbjct 2257 CAACGTCTGATCTTTGCAGGTAA 2235 >seq29780 Length=3062 Score = 125 bits (138), Expect = 8e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || ||||| || | || || ||||| || ||| | || || || | Sbjct 232 ATGCAAATTTTCGTCAAAACTTTGACGGGGAAGACGATCACTTTGGAAGTGGAAGCGTCG 173 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| | ||||| || || |||||||| || || || || ||||| ||| Sbjct 172 GATACGATCGAAAACGTCAAGGCGAAGATCCAGGACAAAGAAGGCATCCCCCCAGATCAG 113 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| |||||||||| || ||||| || || || | ||| || ||| | || ||||| Sbjct 112 CAGCGCTTAATTTTTGCCGGCAAGCAGCTGGAAGACGGTCGCACTCTATCGGATTATAAC 53 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || || || ||| | ||||| ||| | || ||||||||||| Sbjct 52 ATACAGAAAGAGTCGACTTTGCATCTCGTCCTTCGCCTTCGCGGTGG 6 Score = 105 bits (116), Expect = 8e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| || || || |||||||| || || ||||| || || ||| | Sbjct 647 ATGCAGATTTTTGTTAAAACTCTGACCGGCAAAACAATCACTCTGGAAGTGGAGCCGTCC 588 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||||| || |||||||||||||| || |||||||| || ||| Sbjct 587 GACACGATCGAGAACGTAAAGGCGAAGATTCAGGACAAGGAAGGCATTCCTCCTGATCAG 528 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCA 27551 |||||||| ||||| ||||||| ||| Sbjct 527 CAGCGTCTTATTTTCGCTGGTATGCA 502 >seq14519 Length=5345 Score = 114 bits (126), Expect = 1e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || ||||| || ||||| || || || ||| || Sbjct 4969 ATGCAGATCTTCGTGAAGACTCTGACTGGCAAAACCATTACGCTGGAAGTCGAGGCATCA 5028 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | ||| |||| || || ||||||||||||||||| ||||| || || ||| Sbjct 5029 GATACCATCGAGAATGTGAAAGCGAAGATTCAGGACAAGGAGGGTATTCCACCGGATCAG 5088 Query 27526 CAGCGTCTAATTTTTGCTGGT 27546 ||||| || || ||||||||| Sbjct 5089 CAGCGGCTTATCTTTGCTGGT 5109 Score = 109 bits (120), Expect = 6e-19 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| || || | || || || || || ||| | ||||| ||| || Sbjct 3910 ATGCAAATTTTTGTAAAAACCTTAACGGGTAAAACGATCACTTTGGAGGTAGAGGCATCG 3969 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| |||| | || || |||||||||||||| ||||| || ||||| || ||| Sbjct 3970 GATACGATTGAAAATGTTAAAGCGAAAATTCAGGACAAAGAGGGCATCCCTCCGGATCAG 4029 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGC 27550 ||||| || || ||||||||| ||| Sbjct 4030 CAGCGCCTCATCTTTGCTGGTGAGC 4054 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/141 (76%), Gaps = 6/141 (4%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGA---GTCA 27462 ||||| || || |||||||| | || ||||| || || || || || || || |||| Sbjct 4480 ATGCAGATATTCGTCAAGACTTTGACTGGCAAAACCATCACGCTGGAAGTCGAAGCGTCA 4539 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 | ||| ||| | |||| |||| || || ||||||||||||||||| ||||| || || Sbjct 4540 G---ATACCATCGAAAATGTGAAAGCGAAGATTCAGGACAAGGAGGGTATTCCACCGGAT 4596 Query 27523 CAGCAGCGTCTAATTTTTGCT 27543 |||||||| || || |||||| Sbjct 4597 CAGCAGCGGCTTATCTTTGCT 4617 Score = 84.2 bits (92), Expect = 2e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 27423 GACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTT 27482 ||| || ||||| || || || ||||| || || ||| | |||| ||| | ||| | Sbjct 1285 GACCCTCACCGGAAAAACGATCACTCTGGAAGTGGAGGCCTCGGATACCATCGAGAATGT 1344 Query 27483 GAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGC 27542 ||| || || || || || ||||||||||| || |||||||| |||||||| || || || Sbjct 1345 GAAAGCGAAGATACAAGATAAGGAGGGAATCCCACCAGACCAACAGCGTCTCATCTTCGC 1404 Query 27543 TGGT 27546 |||| Sbjct 1405 TGGT 1408 Score = 82.4 bits (90), Expect = 9e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 27424 ACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTG 27483 || || ||||| || || || ||||| || || ||| | |||| ||| | ||| || Sbjct 2524 ACTCTCACCGGTAAAACGATCACTCTGGAAGTGGAGGCCTCGGATACCATCGAGAATGTG 2583 Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 ||||| || || || || ||||||||||| || ||||| || |||||||| || || ||| Sbjct 2584 AAGGCGAAGATACAAGATAAGGAGGGAATCCCACCAGATCAACAGCGTCTCATCTTCGCT 2643 Query 27544 GGT 27546 ||| Sbjct 2644 GGT 2646 >seq30912 Length=2956 Score = 113 bits (124), Expect = 5e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 27492 AATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCA 27551 ||| |||| ||| || || || | ||| |||||||| | |||||||||||| || ||||| Sbjct 1251 AATCCAGGGCAAAGAAGGTATCCTTCCGGACCAGCAACATCTAATTTTTGCCGGCAAGCA 1192 Query 27552 ACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCT 27611 | ||||| ||||| || || | || | |||| ||||||||||||| ||| | ||||| Sbjct 1191 GTTGGAGGACGATCGCACTTTATCGGATTTTAATATCCAAAAGGAATCGACTTTGCATCT 1132 Query 27612 AGTCTTGCGTCTTCGCGGTG 27631 ||| | || |||||||||| Sbjct 1131 CGTCCTTCGCCTTCGCGGTG 1112 >seq32511 Length=2827 Score = 109 bits (120), Expect = 6e-19 Identities = 109/140 (78%), Gaps = 1/140 (1%) Strand=Plus/Minus Query 27492 AATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCA 27551 ||| |||| ||| || || || | ||| |||||||| |||||||||||||| || ||||| Sbjct 1272 AATCCAGGGCAAAGAAGGTATCCTTCCGGACCAGCAACGTCTAATTTTTGCCGGCAAGCA 1213 Query 27552 ACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCT 27611 | ||||| ||||| || || | || | ||| ||||||||||||| ||| | ||||| Sbjct 1212 GTTGGAGGACGATCGCACTTTATCGGATTTTAACATCCAAAAGGAATCGACT-TGCATCT 1154 Query 27612 AGTCTTGCGTCTTCGCGGTG 27631 || | ||||||||||||| Sbjct 1153 CATCCTTCGTCTTCGCGGTG 1134 >seq73431 Length=1108 Score = 104 bits (114), Expect = 3e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || ||||| || | || || ||||| || ||| |||| || || | Sbjct 566 ATGCAAATTTTCGTCAAAACTTTGACAGGGAAGACGATCACTTTTGAAGTGGAAGCGTCG 507 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | || | ||||| || || ||| |||| || || || || ||||| ||| Sbjct 506 GATACGATCGAAAGCGTCAAGGCGAAGATCCAGCACAAAGAAGGCATCCCCCCAGATCAG 447 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | ||||||||||||| ||||| | || || | ||| || ||| | || ||||| Sbjct 446 CAGAGCTTAATTTTTGCTGGCAAGCAGTTGGAAGACGGTCGCACTCTATCGGATTATAAC 387 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || | || || | ||||| ||| | || ||||| |||| Sbjct 386 ATCCAGGAGAAGTCGACCTTACATCTCGTCCTTCGCTTTCGCAGTGG 340 >seq19432 Length=4349 Score = 100 bits (110), Expect = 3e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 27397 ATTACTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTT 27456 ||| | || ||||| || | ||| || ||||| || ||||| || || ||||| ||||| Sbjct 2065 ATTGCAATCATGCAGATTTATGTGAAAACGCTCACTGGCAAAACGATCACTCTGGAGGTG 2006 Query 27457 GAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCT 27516 ||| || |||| ||||| ||| ||||||| || || ||||||||||| || || || Sbjct 2005 GAGGCATCGGATACCATTGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGCATACCA 1946 Query 27517 CCAGACCAGCAGCGT 27531 || || ||||||||| Sbjct 1945 CCGGATCAGCAGCGT 1931 >seq76917 Length=1040 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| | ||||| || || || || || ||||||||| || | Sbjct 268 ATGCAGATCTTCGTGAAGACTTTGACCGGTAAAACCATCACACTGGAGGTTGAGGCATCT 327 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || ||||||| || ||||||||||| || || ||||| || || ||| Sbjct 328 GACACCATCGAGAACGTGAAGGCGAAGATTCAGGACAAAGAAGGTATTCCACCGGATCAG 387 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 || || || || || || |||| Sbjct 388 CAACGGCTTATCTTCGCAGGTA 409 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| || || || || || ||| | Sbjct 607 ATGCAGATCTTCGTGAAGACTCTAACTGGCAAGACAATCACACTGGAAGTGGAGGCGTCC 666 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||||| || ||||| ||||||||||||||||| || || ||| Sbjct 667 GACACGATCGAGAACGTGAAGGCAAAGATTCAAGACAAGGAGGGAATTCCACCGGATCAG 726 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 ||||| || || || || |||| Sbjct 727 CAGCGACTTATCTTCGCAGGTA 748 >seq97776 Length=741 Score = 89.7 bits (98), Expect = 6e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || ||||| || || || || || || || | | Sbjct 29 ATGCAGATCTTCGTGAAGACTCTGACTGGCAAAACCATCACGCTGGAAGTCGAAGCGTCT 88 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | || || || ||||||||||||||||| ||||| ||||| ||| Sbjct 89 GACACCATCGAGAACGTAAAAGCGAAGATTCAGGACAAGGAGGGTATTCCACCAGATCAG 148 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 ||||| || || || || |||| Sbjct 149 CAGCGGCTTATCTTCGCAGGTA 170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569395044679120