Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25] 128,401 sequences; 322,334,493 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq65209 104 1e-17 seq29780 96.9 2e-15 >seq65209 Length=1292 Score = 104 bits (114), Expect = 1e-17 Identities = 142/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 |||||||| ||||||||||| || | || || |||| || | || || |||||||| Sbjct 497 TCCTTTTGGATGTTATAATCCGACAAAGTGCGACCGTCCTCCAACTGCTTGCCGGCAAAA 556 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 || | ||| || || ||||| || | ||||| ||||| |||| || | |||||| | Sbjct 557 ATAAGACGTTGCTGATCCGGAGGGATACCCTCTTTGTCCTGGATC-TTCGCCTTAACGTT 615 Query 34636 -AAAATTGTGTCTTCGCT--CTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTC 34692 ||| ||||| || | ||||||||||| || || || || || || |||||||| Sbjct 616 CTCAATGGTGTC--CGATGCCTCCACTTCCAGAGTGATTGTCTTGCCCGTCAACGTTTTG 673 Query 34693 ACAAAAATCTGCAT 34706 || ||||||||||| Sbjct 674 ACGAAAATCTGCAT 687 >seq29780 Length=3062 Score = 96.9 bits (106), Expect = 2e-15 Identities = 163/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | ||| || | || | ||| | ||| ||| || || ||||||||||| || Sbjct 5 GCCACCGCGAAGGCGAAGGACGAGATGCAAAGTCGACTCTTTCTGTATGTTATAATCCGA 64 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || ||||||| || || || |||||||| ||||| ||||| || || || || Sbjct 65 TAGAGTGCGACCGTCTTCCAGCTGCTTGCCGGCAAAAATTAAGCGCTGCTGATCTGGGGG 124 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGT-CTTCGCTCTCC 34656 | || || ||||| |||| || | || ||| | || || | | |||| ||| Sbjct 125 GATGCCTTCTTTGTCCTGGATC-TTCGCCTTGACGTTTTCGATCGTATCCGACGCT-TCC 182 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||||||| || ||||| || || || || ||||| || ||||| |||||| Sbjct 183 ACTTCCAAAGTGATCGTCTTCCCCGTCAAAGTTTTGACGAAAATTTGCATG 233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314237083681433