Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25]
128,401 sequences; 322,334,493 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq73431 138 1e-27
seq29780 138 1e-27
seq82153 105 6e-18
seq76917 100 2e-16
seq65209 95.1 1e-14
seq19432 89.7 4e-13
seq32511 82.4 7e-11
>seq73431
Length=1108
Score = 138 bits (152), Expect = 1e-27
Identities = 168/229 (73%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
|||||| || || || |||||| |||| || ||| | || ||| ||||||||||| ||||
Sbjct 567 CATGCAAATTTTCGTCAAAACTTTGACAGGGAAGACGATCACTTTTGAAGTGGAAGCGTC 508
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
|| |||| || | ||||| || || || ||||||||||||| || || |||||
Sbjct 507 GGATACGATCGAAAGCGTCAAGGCGAAGATCCAGCACAAAGAAGGCATCCCCCCAGATCA 448
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
||| | ||||| | || ||||| || ||||||||| || || | || ||||| ||
Sbjct 447 GCAGAGCTTAATTTTTGCTGGCAAGCAGTTGGAAGACGGTCGCACTCTATCGGATTATAA 388
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215
||| || || |||||||||||||| | || | || || || |||||
Sbjct 387 CATCCAGGAGAAGTCGACCTTACATCTCGTCCTTCGCTTTCGCAGTGGC 339
>seq29780
Length=3062
Score = 138 bits (152), Expect = 1e-27
Identities = 168/229 (73%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
|||||| || || || |||||| |||| || ||| | || ||| | ||||||||| ||||
Sbjct 233 CATGCAAATTTTCGTCAAAACTTTGACGGGGAAGACGATCACTTTGGAAGTGGAAGCGTC 174
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
|| |||| || | ||||| || || || |||||||||||||| || || |||||
Sbjct 173 GGATACGATCGAAAACGTCAAGGCGAAGATCCAGGACAAAGAAGGCATCCCCCCAGATCA 114
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
||||| ||||| | |||||||| || |||||||| || || | || ||||| ||
Sbjct 113 GCAGCGCTTAATTTTTGCCGGCAAGCAGCTGGAAGACGGTCGCACTCTATCGGATTATAA 54
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215
||| || || |||||||| || ||| | || | || | || ||||||
Sbjct 53 CATACAGAAAGAGTCGACTTTGCATCTCGTCCTTCGCCTTCGCGGTGGC 5
Score = 122 bits (134), Expect = 8e-23
Identities = 111/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| ||||||||||||||||| | || ||||| |||||||| ||||||
Sbjct 647 ATGCAGATTTTTGTTAAAACTCTGACCGGCAAAACAATCACTCTGGAAGTGGAGCCGTCC 588
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| |||| |||| || || || ||||| ||||| |||||||| || || |||||
Sbjct 587 GACACGATCGAGAACGTAAAGGCGAAGATTCAGGACAAGGAAGGCATTCCTCCTGATCAG 528
Query 27108 CAGCGTTTAATATACGCCGG 27127
|||||| | || | ||| ||
Sbjct 527 CAGCGTCTTATTTTCGCTGG 508
>seq82153
Length=950
Score = 105 bits (116), Expect = 6e-18
Identities = 163/232 (70%), Gaps = 3/232 (1%)
Strand=Plus/Minus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGC---AAGTCTATTACTCTTGAAGTGGAACC 27043
|||||| || ||||| |||| | ||| || ||| | || ||||| ||||||||| |
Sbjct 359 CATGCAAATTTTTGTCAAAATTGTGATGGGAGGGAAGACGATCACTCTGGAAGTGGAAGC 300
Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103
||| || |||| || | ||||| || || || |||||||||||| | || || |
Sbjct 299 GTCGGATACGATCGAAAGCGTCAAGGCGAAGATCCAGGACAAAGAAGGCTTCCCCCCACA 240
Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163
|| ||| |||| | ||| |||| | |||||||||||| || | || |||||
Sbjct 239 CCAGCAGTACCTAATTTTTGCCCGCAAGCTGTTGGAAGACAGTCATACTCTATCGGATTA 180
Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215
|||||| || || ||||||||||| || | || | || | || ||||||
Sbjct 179 CAACATACAGAACGAGTCGACCTTGTATCTCGTCCTTCGCCTTCGCGGTGGC 128
>seq76917
Length=1040
Score = 100 bits (110), Expect = 2e-16
Identities = 97/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || || ||||| || |||||| | || || || |||||||| |||||
Sbjct 607 ATGCAGATCTTCGTGAAGACTCTAACTGGCAAGACAATCACACTGGAAGTGGAGGCGTCC 666
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| |||| |||| || || ||| ||||||||||| || || || ||||| |||||
Sbjct 667 GACACGATCGAGAACGTGAAGGCAAAGATTCAAGACAAGGAGGGAATTCCACCGGATCAG 726
Query 27108 CAGCG 27112
|||||
Sbjct 727 CAGCG 731
>seq65209
Length=1292
Score = 95.1 bits (104), Expect = 1e-14
Identities = 96/125 (77%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || || || || ||||| ||||||||| | || || | || ||||| |||||
Sbjct 1100 ATGCAAATTTTCGTGAAGACTCTCACCGGCAAGACAATCACATTGGAGGTGGAGGCGTCC 1041
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| ||||||| | ||||| ||| || || |||||||||||||| || || |||||
Sbjct 1040 GACACGATTGAAAACGTCAAGGCAAAGATCCAGGACAAAGAAGGCATTCCCCCAGATCAG 981
Query 27108 CAGCG 27112
|||||
Sbjct 980 CAGCG 976
>seq19432
Length=4349
Score = 89.7 bits (98), Expect = 4e-13
Identities = 96/127 (76%), Gaps = 0/127 (0%)
Strand=Plus/Minus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||| | ||| ||||| || || ||||| | || ||||| || ||||| | ||
Sbjct 2057 CATGCAGATTTATGTGAAAACGCTCACTGGCAAAACGATCACTCTGGAGGTGGAGGCATC 1998
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
|| | ||||||| || || ||| || || ||||| |||||||||||||| |||||
Sbjct 1997 GGATACCATTGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGCATACCACCGGATCA 1938
Query 27107 ACAGCGT 27113
||||||
Sbjct 1937 GCAGCGT 1931
>seq32511
Length=2827
Score = 82.4 bits (90), Expect = 7e-11
Identities = 93/125 (74%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||| |||| || || || ||||| || ||||| | || || | || |||| |||||
Sbjct 1719 ATGTAGATCTTCGTGAAGACTCTAACTGGCAAAACAATCACATTGGAGATGGAGGCGTCC 1660
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| |||| |||| ||||| ||| ||||| ||||| || || || ||||| ||||||
Sbjct 1659 GACACGATCGAGAACGTCAAGGCAAAGATTCAGGACAAGGAGGGAATTCCACCGGATCAA 1600
Query 27108 CAGCG 27112
|||||
Sbjct 1599 CAGCG 1595
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434220350531520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |