Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25] 128,401 sequences; 322,334,493 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq73431 138 1e-27 seq29780 138 1e-27 seq82153 105 6e-18 seq76917 100 2e-16 seq65209 95.1 1e-14 seq19432 89.7 4e-13 seq32511 82.4 7e-11 >seq73431 Length=1108 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || |||||| |||| || ||| | || ||| ||||||||||| |||| Sbjct 567 CATGCAAATTTTCGTCAAAACTTTGACAGGGAAGACGATCACTTTTGAAGTGGAAGCGTC 508 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || |||| || | ||||| || || || ||||||||||||| || || ||||| Sbjct 507 GGATACGATCGAAAGCGTCAAGGCGAAGATCCAGCACAAAGAAGGCATCCCCCCAGATCA 448 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | ||||| | || ||||| || ||||||||| || || | || ||||| || Sbjct 447 GCAGAGCTTAATTTTTGCTGGCAAGCAGTTGGAAGACGGTCGCACTCTATCGGATTATAA 388 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||| || || |||||||||||||| | || | || || || ||||| Sbjct 387 CATCCAGGAGAAGTCGACCTTACATCTCGTCCTTCGCTTTCGCAGTGGC 339 >seq29780 Length=3062 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || |||||| |||| || ||| | || ||| | ||||||||| |||| Sbjct 233 CATGCAAATTTTCGTCAAAACTTTGACGGGGAAGACGATCACTTTGGAAGTGGAAGCGTC 174 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || |||| || | ||||| || || || |||||||||||||| || || ||||| Sbjct 173 GGATACGATCGAAAACGTCAAGGCGAAGATCCAGGACAAAGAAGGCATCCCCCCAGATCA 114 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| ||||| | |||||||| || |||||||| || || | || ||||| || Sbjct 113 GCAGCGCTTAATTTTTGCCGGCAAGCAGCTGGAAGACGGTCGCACTCTATCGGATTATAA 54 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||| || || |||||||| || ||| | || | || | || |||||| Sbjct 53 CATACAGAAAGAGTCGACTTTGCATCTCGTCCTTCGCCTTCGCGGTGGC 5 Score = 122 bits (134), Expect = 8e-23 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||||||||||||||| | || ||||| |||||||| |||||| Sbjct 647 ATGCAGATTTTTGTTAAAACTCTGACCGGCAAAACAATCACTCTGGAAGTGGAGCCGTCC 588 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| |||| || || || ||||| ||||| |||||||| || || ||||| Sbjct 587 GACACGATCGAGAACGTAAAGGCGAAGATTCAGGACAAGGAAGGCATTCCTCCTGATCAG 528 Query 27108 CAGCGTTTAATATACGCCGG 27127 |||||| | || | ||| || Sbjct 527 CAGCGTCTTATTTTCGCTGG 508 >seq82153 Length=950 Score = 105 bits (116), Expect = 6e-18 Identities = 163/232 (70%), Gaps = 3/232 (1%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGC---AAGTCTATTACTCTTGAAGTGGAACC 27043 |||||| || ||||| |||| | ||| || ||| | || ||||| ||||||||| | Sbjct 359 CATGCAAATTTTTGTCAAAATTGTGATGGGAGGGAAGACGATCACTCTGGAAGTGGAAGC 300 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 ||| || |||| || | ||||| || || || |||||||||||| | || || | Sbjct 299 GTCGGATACGATCGAAAGCGTCAAGGCGAAGATCCAGGACAAAGAAGGCTTCCCCCCACA 240 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 || ||| |||| | ||| |||| | |||||||||||| || | || ||||| Sbjct 239 CCAGCAGTACCTAATTTTTGCCCGCAAGCTGTTGGAAGACAGTCATACTCTATCGGATTA 180 Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 |||||| || || ||||||||||| || | || | || | || |||||| Sbjct 179 CAACATACAGAACGAGTCGACCTTGTATCTCGTCCTTCGCCTTCGCGGTGGC 128 >seq76917 Length=1040 Score = 100 bits (110), Expect = 2e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||||| || |||||| | || || || |||||||| ||||| Sbjct 607 ATGCAGATCTTCGTGAAGACTCTAACTGGCAAGACAATCACACTGGAAGTGGAGGCGTCC 666 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| |||| || || ||| ||||||||||| || || || ||||| ||||| Sbjct 667 GACACGATCGAGAACGTGAAGGCAAAGATTCAAGACAAGGAGGGAATTCCACCGGATCAG 726 Query 27108 CAGCG 27112 ||||| Sbjct 727 CAGCG 731 >seq65209 Length=1292 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || ||||| ||||||||| | || || | || ||||| ||||| Sbjct 1100 ATGCAAATTTTCGTGAAGACTCTCACCGGCAAGACAATCACATTGGAGGTGGAGGCGTCC 1041 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||| | ||||| ||| || || |||||||||||||| || || ||||| Sbjct 1040 GACACGATTGAAAACGTCAAGGCAAAGATCCAGGACAAAGAAGGCATTCCCCCAGATCAG 981 Query 27108 CAGCG 27112 ||||| Sbjct 980 CAGCG 976 >seq19432 Length=4349 Score = 89.7 bits (98), Expect = 4e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| | ||| ||||| || || ||||| | || ||||| || ||||| | || Sbjct 2057 CATGCAGATTTATGTGAAAACGCTCACTGGCAAAACGATCACTCTGGAGGTGGAGGCATC 1998 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | ||||||| || || ||| || || ||||| |||||||||||||| ||||| Sbjct 1997 GGATACCATTGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGCATACCACCGGATCA 1938 Query 27107 ACAGCGT 27113 |||||| Sbjct 1937 GCAGCGT 1931 >seq32511 Length=2827 Score = 82.4 bits (90), Expect = 7e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||| |||| || || || ||||| || ||||| | || || | || |||| ||||| Sbjct 1719 ATGTAGATCTTCGTGAAGACTCTAACTGGCAAAACAATCACATTGGAGATGGAGGCGTCC 1660 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| |||| ||||| ||| ||||| ||||| || || || ||||| |||||| Sbjct 1659 GACACGATCGAGAACGTCAAGGCAAAGATTCAGGACAAGGAGGGAATTCCACCGGATCAA 1600 Query 27108 CAGCG 27112 ||||| Sbjct 1599 CAGCG 1595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434220350531520