Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25] 128,401 sequences; 322,334,493 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq65209 138 3e-27 seq29780 132 1e-25 seq27460 114 3e-20 seq73431 104 6e-17 seq15780 102 2e-16 seq76917 100 7e-16 seq6983 98.7 2e-15 seq30912 93.3 1e-13 seq97776 91.5 4e-13 seq14519 87.8 4e-12 seq32511 86.0 1e-11 >seq65209 Length=1292 Score = 138 bits (152), Expect = 3e-27 Identities = 163/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | ||||| || || | ||| ||||| ||||||| || ||||| | |||||| Sbjct 467 CGAAGGCGAAGGACGAGATGCAAAGTCGATTCCTTTTGGATGTTATAATCCGACAAAGTG 526 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || | |||||| || || || ||||| ||||| || || || || ||||| Sbjct 527 CGACCGTCCTCCAACTGCTTGCCGGCAAAAATAAGACGTTGCTGATCCGGAGGGATACCC 586 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || ||||| |||||||| ||| || || |||||||| || | ||||| || | Sbjct 587 TCTTTGTCCTGGATCTTCGCCTTAACGTTCTCAATGGTGTCCGATGCCTCCACTTCCAGA 646 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||||||||| ||||| | ||| | ||||| Sbjct 647 GTGATTGTCTTGCCCGTCAACGTTTTGACGAAAATCTGCAT 687 Score = 107 bits (118), Expect = 5e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 225565 AGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGG 225624 || ||| | ||||| ||||||||||| || || || || ||||| ||||| ||||| ||| Sbjct 952 AGGTGCATACCAGCAAAGATAAGTCGCTGCTGATCTGGGGGAATGCCTTCTTTGTCCTGG 1011 Query 225625 ATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTG 225684 |||||| ||| || ||| || ||||| || | ||||| || || ||||| |||||| Sbjct 1012 ATCTTTGCCTTGACGTTTTCAATCGTGTCGGACGCCTCCACCTCCAATGTGATTGTCTTG 1071 Query 225685 CCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || | ||| || | ||| | |||||| Sbjct 1072 CCGGTGAGAGTCTTCACGAAAATTTGCAT 1100 >seq29780 Length=3062 Score = 132 bits (146), Expect = 1e-25 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | ||||| || || | ||| || ||||| || | || ||||| | | ||| Sbjct 12 CGAAGGCGAAGGACGAGATGCAAAGTCGACTCTTTCTGTATGTTATAATCCGATAGAGTG 71 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || ||||| |||||||| || || || || | || || || || || || || ||| Sbjct 72 CGACCGTCTTCCAGCTGCTTGCCGGCAAAAATTAAGCGCTGCTGATCTGGGGGGATGCCT 131 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || ||||| |||||||| ||| || |||||| || || || | |||||| || || Sbjct 132 TCTTTGTCCTGGATCTTCGCCTTGACGTTTTCGATCGTATCCGACGCTTCCACTTCCAAA 191 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||||||||| |||||||||||||| | ||| | |||||| Sbjct 192 GTGATCGTCTTCCCCGTCAAAGTTTTGACGAAAATTTGCAT 232 Score = 87.8 bits (96), Expect = 4e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 225568 TGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATC 225627 ||| | |||||||| ||||| || || || || || ||||| ||||||||||| || ||| Sbjct 502 TGCATACCAGCGAAAATAAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGAATC 561 Query 225628 TTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCC 225687 || ||| || ||||| ||||| || | ||||| || | ||||| || ||||| Sbjct 562 TTCGCCTTTACGTTCTCGATCGTGTCGGACGGCTCCACTTCCAGAGTGATTGTTTTGCCG 621 Query 225688 GTCAAAGTTTT 225698 |||| |||||| Sbjct 622 GTCAGAGTTTT 632 >seq27460 Length=3287 Score = 114 bits (126), Expect = 3e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || || ||||| || ||||| || || ||||| || ||||||||||| || || ||| Sbjct 2235 TTACCTGCAAAGATCAGACGTTGCTGATCCGGCGGGATGCCTTCCTTGTCCTGAATTTTT 2294 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||||||| ||||||||| || |||| |||||| || | ||||||||||||||| || Sbjct 2295 GTCTTCACATTTTCGATGGTATCCGAGGATTCCACCTCAAGCGTGATCGTCTTGCCGGTT 2354 Query 225691 AAAGTTTTTATGAACACTTGCAT 225713 | || || | ||| | |||||| Sbjct 2355 AGCGTCTTCACGAAGATTTGCAT 2377 >seq73431 Length=1108 Score = 104 bits (114), Expect = 6e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 225529 TGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGT 225588 |||| || ||||| | | ||| | || ||||| | |||||| ||||| || || | Sbjct 382 TGGATGTTATAATCCGATAGAGTGCGACCGTCTTCCAACTGCTTGCCAGCAAAAATTAAG 441 Query 225589 CGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATG 225648 | || || || || || || ||||| |||| |||||||| ||| || |||||| Sbjct 442 CTCTGCTGATCTGGGGGGATGCCTTCTTTGTGCTGGATCTTCGCCTTGACGCTTTCGATC 501 Query 225649 GTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACT 225708 || || || | |||||| || || ||||||||||| || ||||||||||| | ||| | | Sbjct 502 GTATCCGACGCTTCCACTTCAAAAGTGATCGTCTTCCCTGTCAAAGTTTTGACGAAAATT 561 Query 225709 TGCAT 225713 ||||| Sbjct 562 TGCAT 566 >seq15780 Length=5038 Score = 102 bits (112), Expect = 2e-16 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 |||||||| ||||| || || || |||||||| || || ||||| ||||| |||||||| Sbjct 1542 AATATTTGCCCATCGGTGATCGAAATAACATTGGTCGGAATATAGGCAGACACATCACCC 1601 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACC 4574 ||||||||||||| || || | ||||| ||||| |||||||| Sbjct 1602 GCTTGTGTTTCGATGACCGGAAGCGCTGTCAGTGAGCCACCACC 1645 >seq76917 Length=1040 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || |||||||||||||| || || || || ||||| || ||||||||||| |||||| | Sbjct 746 CCTGCGAAGATAAGTCGCTGCTGATCCGGTGGAATTCCCTCCTTGTCTTGAATCTTTGCC 687 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 ||||| ||||| ||||| || | ||||| || | ||||| |||||||| || | | Sbjct 686 TTCACGTTCTCGATCGTGTCGGACGCCTCCACTTCCAGTGTGATTGTCTTGCCAGTTAGA 627 Query 225694 GTTTTTATGAACACTTGCAT 225713 || || | ||| | ||||| Sbjct 626 GTCTTCACGAAGATCTGCAT 607 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || ||||||||||| ||||| || || || ||||||||||| ||||| || ||||| | Sbjct 407 CCTGCGAAGATAAGCCGTTGCTGATCCGGTGGAATACCTTCTTTGTCCTGAATCTTCGCC 348 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 ||||| ||||||||||| || | || || || | ||||| || || || |||||| Sbjct 347 TTCACGTTCTCGATGGTGTCAGATGCCTCAACCTCCAGTGTGATGGTTTTACCGGTCAAA 288 Query 225694 GTTTTTATGAACACTTGCAT 225713 || || | ||| | ||||| Sbjct 287 GTCTTCACGAAGATCTGCAT 268 >seq6983 Length=8125 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 |||||||| ||||| || || || |||||||| || || ||||| ||||| |||||||| Sbjct 1413 AATATTTGCCCATCGGTGATCGAAATAACATTGGTCGGAATATAGGCAGACACATCACCC 1354 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACC 4574 ||||||||||||| || || | || || ||||| |||||||| Sbjct 1353 GCTTGTGTTTCGATGACCGGAAGCGCCGTCAGTGAGCCACCACC 1310 >seq30912 Length=2956 Score = 93.3 bits (102), Expect = 1e-13 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || |||||||||||||| ||||| || || ||||| || |||||||| || |||||| | Sbjct 1559 CCTGCGAAGATAAGTCGCTGTTGATCCGGTGGAATTCCCTCCTTGTCCTGAATCTTTGCC 1618 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 ||||| ||||| ||||| || | |||| || || ||||| || ||||| || | | Sbjct 1619 TTCACGTTCTCGATCGTGTCGGACGCCTCCATCTCCAATGTGATTGTTTTGCCAGTTAGA 1678 Query 225694 GTTTTTATGAA 225704 || || | ||| Sbjct 1679 GTCTTCACGAA 1689 >seq97776 Length=741 Score = 91.5 bits (100), Expect = 4e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || ||||||||||| || || || || || |||||||| |||||||| || ||||| Sbjct 168 CCTGCGAAGATAAGCCGCTGCTGATCTGGTGGAATACCCTCCTTGTCCTGAATCTTCGCT 109 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 || || ||||||||||| || | ||| || || | |||||| || ||||| |||| | Sbjct 108 TTTACGTTCTCGATGGTGTCAGACGCTTCGACTTCCAGCGTGATGGTTTTGCCAGTCAGA 49 Query 225694 GTTTTTATGAACACTTGCAT 225713 || || | ||| | ||||| Sbjct 48 GTCTTCACGAAGATCTGCAT 29 >seq14519 Length=5345 Score = 87.8 bits (96), Expect = 4e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 ||||||||||| || || ||||| || || || || || ||||| ||||| ||||| | Sbjct 2645 CCAGCGAAGATGAGACGCTGTTGATCTGGTGGGATTCCCTCCTTATCTTGTATCTTCGCC 2586 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 |||||| |||||||| || |||| ||||| || | |||||||| || || || | | Sbjct 2585 TTCACATTCTCGATGGTATCCGAGGCCTCCACTTCCAGAGTGATCGTTTTACCGGTGAGA 2526 Query 225694 GTT 225696 ||| Sbjct 2525 GTT 2523 Score = 84.2 bits (92), Expect = 5e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 ||||||||||| || || |||||||| || || || || ||||| ||||| ||||| Sbjct 1407 CCAGCGAAGATGAGACGCTGTTGGTCTGGTGGGATTCCCTCCTTATCTTGTATCTTCGCT 1348 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 |||||| |||||||| || |||| ||||| || | |||||||| || || || Sbjct 1347 TTCACATTCTCGATGGTATCCGAGGCCTCCACTTCCAGAGTGATCGTTTTTCCGGT 1292 >seq32511 Length=2827 Score = 86.0 bits (94), Expect = 1e-11 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 225578 CGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCA 225637 ||||||||||||| ||||| || || ||||| || |||||||| || |||||| ||| | Sbjct 1584 CGAAGATAAGTCGCTGTTGATCCGGTGGAATTCCCTCCTTGTCCTGAATCTTTGCCTTGA 1643 Query 225638 CAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTT 225697 | ||||| ||||| || | |||| || || ||||| || ||||| || | ||| | Sbjct 1644 CGTTCTCGATCGTGTCGGACGCCTCCATCTCCAATGTGATTGTTTTGCCAGTTAGAGTCT 1703 Query 225698 TTATGAA 225704 | | ||| Sbjct 1704 TCACGAA 1710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1190569321830294