Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25] 128,401 sequences; 322,334,493 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq14519 109 1e-18 seq76917 100 7e-16 seq97776 95.1 3e-14 seq65209 95.1 3e-14 seq27460 84.2 5e-11 >seq14519 Length=5345 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024 || || |||||||||| |||||| |||| | || || ||||| || ||||| || | Sbjct 5108 CCAGCAAAGATAAGCCGCTGCTGATCCGGTGGAATACCCTCCTTGTCCTGAATCTTCGCT 5049 Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 || ||| |||| | | | ||||| ||| ||||| || ||||| |||||||| || ||| Sbjct 5048 TTCACATTCTCGATGGTATCTGATGCCTCGACTTCCAGCGTAATGGTTTTGCCAGTCAGA 4989 Query 152085 GTCTTCACGAAGACCTGCAT 152104 ||||||||||||| |||||| Sbjct 4988 GTCTTCACGAAGATCTGCAT 4969 >seq76917 Length=1040 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024 || ||||||||||| | |||||| |||| | ||||| ||||| |||||||| ||| Sbjct 746 CCTGCGAAGATAAGTCGCTGCTGATCCGGTGGAATTCCCTCCTTGTCTTGAATCTTTGCC 687 Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 || || |||| | |||| || ||| ||||| || || || || ||||| || ||| Sbjct 686 TTCACGTTCTCGATCGTGTCGGACGCCTCCACTTCCAGTGTGATTGTCTTGCCAGTTAGA 627 Query 152085 GTCTTCACGAAGACCTGCAT 152104 ||||||||||||| |||||| Sbjct 626 GTCTTCACGAAGATCTGCAT 607 >seq97776 Length=741 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024 || ||||||||||||| |||||| || | | || || ||||| || ||||| || | Sbjct 168 CCTGCGAAGATAAGCCGCTGCTGATCTGGTGGAATACCCTCCTTGTCCTGAATCTTCGCT 109 Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 || || |||| | | |||| || || ||||| || || || |||||||| || ||| Sbjct 108 TTTACGTTCTCGATGGTGTCAGACGCTTCGACTTCCAGCGTGATGGTTTTGCCAGTCAGA 49 Query 152085 GTCTTCACGAAGACCTGCAT 152104 ||||||||||||| |||||| Sbjct 48 GTCTTCACGAAGATCTGCAT 29 >seq65209 Length=1292 Score = 95.1 bits (104), Expect = 3e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| ||||| | ||| || || ||||||||||| ||||| | ||||| | || || Sbjct 476 AGGACGAGATGCAAAGTCGATTCCTTTTGGATGTTATAATCCGACAAAGTGCGACCGTCC 535 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | || ||||| || ||||| | ||||| |||| | ||| || || || || Sbjct 536 TCCAACTGCTTGCCGGCAAAAATAAGACGTTGCTGATCCGGAGGGATACCCTCTTTGTCC 595 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || || |||| | | |||| || ||| ||||| ||||| || || Sbjct 596 TGGATCTTCGCCTTAACGTTCTCAATGGTGTCCGATGCCTCCACTTCCAGAGTGATTGTC 655 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||||| | || || ||||| | |||||| Sbjct 656 TTGCCCGTCAACGTTTTGACGAAAATCTGCAT 687 >seq27460 Length=3287 Score = 84.2 bits (92), Expect = 5e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| || || ||||| || | ||||| |||| || ||| |||||||| || |||||||| Sbjct 2234 TTTACCTGCAAAGATCAGACGTTGCTGATCCGGCGGGATGCCTTCCTTGTCCTGAATTTT 2293 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 | || ||| | || | | | || || || || ||||| || || || ||||| || Sbjct 2294 TGTCTTCACATTTTCGATGGTATCCGAGGATTCCACCTCAAGCGTGATCGTCTTGCCGGT 2353 Query 152081 GAGAGTCTTCACGAAGACCTGCAT 152104 || ||||||||||||| ||||| Sbjct 2354 TAGCGTCTTCACGAAGATTTGCAT 2377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151922605773071