Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25]
128,401 sequences; 322,334,493 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq14519 109 1e-18
seq76917 100 7e-16
seq97776 95.1 3e-14
seq65209 95.1 3e-14
seq27460 84.2 5e-11
>seq14519
Length=5345
Score = 109 bits (120), Expect = 1e-18
Identities = 108/140 (77%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024
|| || |||||||||| |||||| |||| | || || ||||| || ||||| || |
Sbjct 5108 CCAGCAAAGATAAGCCGCTGCTGATCCGGTGGAATACCCTCCTTGTCCTGAATCTTCGCT 5049
Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084
|| ||| |||| | | | ||||| ||| ||||| || ||||| |||||||| || |||
Sbjct 5048 TTCACATTCTCGATGGTATCTGATGCCTCGACTTCCAGCGTAATGGTTTTGCCAGTCAGA 4989
Query 152085 GTCTTCACGAAGACCTGCAT 152104
||||||||||||| ||||||
Sbjct 4988 GTCTTCACGAAGATCTGCAT 4969
>seq76917
Length=1040
Score = 100 bits (110), Expect = 7e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024
|| ||||||||||| | |||||| |||| | ||||| ||||| |||||||| |||
Sbjct 746 CCTGCGAAGATAAGTCGCTGCTGATCCGGTGGAATTCCCTCCTTGTCTTGAATCTTTGCC 687
Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084
|| || |||| | |||| || ||| ||||| || || || || ||||| || |||
Sbjct 686 TTCACGTTCTCGATCGTGTCGGACGCCTCCACTTCCAGTGTGATTGTCTTGCCAGTTAGA 627
Query 152085 GTCTTCACGAAGACCTGCAT 152104
||||||||||||| ||||||
Sbjct 626 GTCTTCACGAAGATCTGCAT 607
>seq97776
Length=741
Score = 95.1 bits (104), Expect = 3e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024
|| ||||||||||||| |||||| || | | || || ||||| || ||||| || |
Sbjct 168 CCTGCGAAGATAAGCCGCTGCTGATCTGGTGGAATACCCTCCTTGTCCTGAATCTTCGCT 109
Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084
|| || |||| | | |||| || || ||||| || || || |||||||| || |||
Sbjct 108 TTTACGTTCTCGATGGTGTCAGACGCTTCGACTTCCAGCGTGATGGTTTTGCCAGTCAGA 49
Query 152085 GTCTTCACGAAGACCTGCAT 152104
||||||||||||| ||||||
Sbjct 48 GTCTTCACGAAGATCTGCAT 29
>seq65209
Length=1292
Score = 95.1 bits (104), Expect = 3e-14
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||| ||||| | ||| || || ||||||||||| ||||| | ||||| | || ||
Sbjct 476 AGGACGAGATGCAAAGTCGATTCCTTTTGGATGTTATAATCCGACAAAGTGCGACCGTCC 535
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| | || ||||| || ||||| | ||||| |||| | ||| || || || ||
Sbjct 536 TCCAACTGCTTGCCGGCAAAAATAAGACGTTGCTGATCCGGAGGGATACCCTCTTTGTCC 595
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
|| || || || || |||| | | |||| || ||| ||||| ||||| || ||
Sbjct 596 TGGATCTTCGCCTTAACGTTCTCAATGGTGTCCGATGCCTCCACTTCCAGAGTGATTGTC 655
Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|||||||| | || || ||||| | ||||||
Sbjct 656 TTGCCCGTCAACGTTTTGACGAAAATCTGCAT 687
>seq27460
Length=3287
Score = 84.2 bits (92), Expect = 5e-11
Identities = 105/144 (73%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020
||| || || ||||| || | ||||| |||| || ||| |||||||| || ||||||||
Sbjct 2234 TTTACCTGCAAAGATCAGACGTTGCTGATCCGGCGGGATGCCTTCCTTGTCCTGAATTTT 2293
Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080
| || ||| | || | | | || || || || ||||| || || || ||||| ||
Sbjct 2294 TGTCTTCACATTTTCGATGGTATCCGAGGATTCCACCTCAAGCGTGATCGTCTTGCCGGT 2353
Query 152081 GAGAGTCTTCACGAAGACCTGCAT 152104
|| ||||||||||||| |||||
Sbjct 2354 TAGCGTCTTCACGAAGATTTGCAT 2377
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151922605773071
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |