Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25]
128,401 sequences; 322,334,493 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq65209 174 3e-38
seq29780 158 3e-33
seq73431 125 1e-23
seq97776 122 2e-22
seq14519 122 2e-22
seq76917 109 1e-18
seq27460 98.7 2e-15
seq30912 86.0 1e-11
seq82153 84.2 5e-11
seq32511 84.2 5e-11
>seq65209
Length=1292
Score = 174 bits (192), Expect = 3e-38
Identities = 176/229 (77%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 282871 AACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG 282930
||||||| || |||||||| || ||||| || || ||| ||||||||||| || || |
Sbjct 459 AACCACCGCGAAGGCGAAGGACGAGATGCAAAGTCGATTCCTTTTGGATGTTATAATCCG 518
Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990
| ||||| || ||||| | || || |||||||| || | |||||| || || |
Sbjct 519 ACAAAGTGCGACCGTCCTCCAACTGCTTGCCGGCAAAAATAAGACGTTGCTGATCCGGAG 578
Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050
| |||||||| ||||| |||||||| || || ||| | || || |||||||| || || |
Sbjct 579 GGATACCCTCTTTGTCCTGGATCTTCGCCTTAACGTTCTCAATGGTGTCCGATGCCTCCA 638
Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|||| |||||||| ||||| |||||||| || || ||||| ||||||||
Sbjct 639 CTTCCAGAGTGATTGTCTTGCCCGTCAACGTTTTGACGAAAATCTGCAT 687
Score = 86.0 bits (94), Expect = 1e-11
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019
|| |||||||| | || || || || ||||| || || ||||| |||||||||||
Sbjct 961 CCAGCAAAGATAAGTCGCTGCTGATCTGGGGGAATGCCTTCTTTGTCCTGGATCTTTGCC 1020
Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079
|| ||| | || || ||||| || || || || || | ||||| ||||| || || | |
Sbjct 1021 TTGACGTTTTCAATCGTGTCGGACGCCTCCACCTCCAATGTGATTGTCTTGCCGGTGAGA 1080
Query 283080 GTCTTAACGAATATCTGCAT 283099
||||| ||||| || |||||
Sbjct 1081 GTCTTCACGAAAATTTGCAT 1100
>seq29780
Length=3062
Score = 158 bits (174), Expect = 3e-33
Identities = 171/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||||| || |||||||| || ||||| || || ||||| || ||||| || || |
Sbjct 6 CCACCGCGAAGGCGAAGGACGAGATGCAAAGTCGACTCTTTCTGTATGTTATAATCCGAT 65
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| ||||| || || || || || || |||||||| || || || || || || ||
Sbjct 66 AGAGTGCGACCGTCTTCCAGCTGCTTGCCGGCAAAAATTAAGCGCTGCTGATCTGGGGGG 125
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| || || ||||| |||||||| || || ||| | ||||| || ||||| ||||| |||
Sbjct 126 ATGCCTTCTTTGTCCTGGATCTTCGCCTTGACGTTTTCGATCGTATCCGACGCTTCCACT 185
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| | |||||||||||| ||||||||||| || ||||| || |||||
Sbjct 186 TCCAAAGTGATCGTCTTCCCCGTCAAAGTTTTGACGAAAATTTGCAT 232
>seq73431
Length=1108
Score = 125 bits (138), Expect = 1e-23
Identities = 166/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGT-GCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||| || | |||||| || |||||||| || | |||| | ||||||| || || |
Sbjct 340 CCACTGCGAAAGCGAAGGACGAGATGTAAGGTCGACTTCTCCT-GGATGTTATAATCCGA 398
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| ||||| || || || | || || || ||||| || || | || || || ||
Sbjct 399 TAGAGTGCGACCGTCTTCCAACTGCTTGCCAGCAAAAATTAAGCTCTGCTGATCTGGGGG 458
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| || || |||| |||||||| || || ||| | ||||| || ||||| ||||| ||
Sbjct 459 GATGCCTTCTTTGTGCTGGATCTTCGCCTTGACGCTTTCGATCGTATCCGACGCTTCCAC 518
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||| | |||||||||||| || |||||||| || ||||| || |||||
Sbjct 519 TTCAAAAGTGATCGTCTTCCCTGTCAAAGTTTTGACGAAAATTTGCAT 566
>seq97776
Length=741
Score = 122 bits (134), Expect = 2e-22
Identities = 93/110 (85%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 282990 GGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCG 283049
||||||||||||||||| || ||||| ||||||||| | ||||| ||||| || ||||||
Sbjct 138 GGAATACCCTCCTTGTCCTGAATCTTCGCTTTTACGTTCTCGATGGTGTCAGACGCTTCG 79
Query 283050 ACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||| || ||||| || || || |||| |||||| ||||| ||||||||
Sbjct 78 ACTTCCAGCGTGATGGTTTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 29
>seq14519
Length=5345
Score = 122 bits (134), Expect = 2e-22
Identities = 109/137 (80%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 282963 GCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTT 283022
|||||||| | || || || || ||||||||||||||||| || ||||| |||||
Sbjct 4616 GCAAAGATAAGCCGCTGCTGATCCGGTGGAATACCCTCCTTGTCCTGAATCTTCGCTTTC 4557
Query 283023 ACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTC 283082
|| | ||||| || || || ||||||||||| || ||||| || || || |||||||||
Sbjct 4556 ACATTTTCGATGGTATCTGACGCTTCGACTTCCAGCGTGATGGTTTTGCCAGTCAAAGTC 4497
Query 283083 TTAACGAATATCTGCAT 283099
|| ||||||||||||||
Sbjct 4496 TTGACGAATATCTGCAT 4480
Score = 104 bits (114), Expect = 5e-17
Identities = 107/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019
|| |||||||| | || || || || ||||||||||||||||| || ||||| |||
Sbjct 5108 CCAGCAAAGATAAGCCGCTGCTGATCCGGTGGAATACCCTCCTTGTCCTGAATCTTCGCT 5049
Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079
|| || | ||||| || || || || |||||||| || || || || || || |||| |
Sbjct 5048 TTCACATTCTCGATGGTATCTGATGCCTCGACTTCCAGCGTAATGGTTTTGCCAGTCAGA 4989
Query 283080 GTCTTAACGAATATCTGCAT 283099
||||| ||||| ||||||||
Sbjct 4988 GTCTTCACGAAGATCTGCAT 4969
Score = 87.8 bits (96), Expect = 4e-12
Identities = 89/116 (77%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019
|| || ||||| | ||| |||||||| || || |||||||| ||||| ||||| |||
Sbjct 1407 CCAGCGAAGATGAGACGCTGTTGGTCTGGTGGGATTCCCTCCTTATCTTGTATCTTCGCT 1348
Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075
|| || | ||||| || ||||| || || ||||| ||||||||||| || || ||
Sbjct 1347 TTCACATTCTCGATGGTATCCGAGGCCTCCACTTCCAGAGTGATCGTTTTTCCGGT 1292
Score = 86.0 bits (94), Expect = 1e-11
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019
|| || ||||| | ||| ||||| || || || |||||||| ||||| ||||| ||
Sbjct 2645 CCAGCGAAGATGAGACGCTGTTGATCTGGTGGGATTCCCTCCTTATCTTGTATCTTCGCC 2586
Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079
|| || | ||||| || ||||| || || ||||| ||||||||||| ||||| || | |
Sbjct 2585 TTCACATTCTCGATGGTATCCGAGGCCTCCACTTCCAGAGTGATCGTTTTACCGGTGAGA 2526
Query 283080 GT 283081
||
Sbjct 2525 GT 2524
>seq76917
Length=1040
Score = 109 bits (120), Expect = 1e-18
Identities = 90/110 (82%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 282990 GGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCG 283049
||||| |||||||||||||| |||||||| || ||| | ||||| ||||| || || ||
Sbjct 716 GGAATTCCCTCCTTGTCTTGAATCTTTGCCTTCACGTTCTCGATCGTGTCGGACGCCTCC 657
Query 283050 ACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||| || ||||| ||||| || || | |||||| ||||| ||||||||
Sbjct 656 ACTTCCAGTGTGATTGTCTTGCCAGTTAGAGTCTTCACGAAGATCTGCAT 607
Score = 104 bits (114), Expect = 5e-17
Identities = 107/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019
|| || ||||| | ||||| || || |||||||| || ||||| || ||||| ||
Sbjct 407 CCTGCGAAGATAAGCCGTTGCTGATCCGGTGGAATACCTTCTTTGTCCTGAATCTTCGCC 348
Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079
|| ||| | ||||| ||||| || || || || || || ||||| || ||||| ||||||
Sbjct 347 TTCACGTTCTCGATGGTGTCAGATGCCTCAACCTCCAGTGTGATGGTTTTACCGGTCAAA 288
Query 283080 GTCTTAACGAATATCTGCAT 283099
||||| ||||| ||||||||
Sbjct 287 GTCTTCACGAAGATCTGCAT 268
>seq27460
Length=3287
Score = 98.7 bits (108), Expect = 2e-15
Identities = 108/144 (75%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 282956 TTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT 283015
||| || |||||||||| |||||| || || ||| || || |||||||| || || ||
Sbjct 2234 TTTACCTGCAAAGATCAGACGTTGCTGATCCGGCGGGATGCCTTCCTTGTCCTGAATTTT 2293
Query 283016 TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075
|| || || | ||||| || ||||| | ||| || || || ||||||||||| || ||
Sbjct 2294 TGTCTTCACATTTTCGATGGTATCCGAGGATTCCACCTCAAGCGTGATCGTCTTGCCGGT 2353
Query 283076 CAAAGTCTTAACGAATATCTGCAT 283099
| ||||| ||||| || |||||
Sbjct 2354 TAGCGTCTTCACGAAGATTTGCAT 2377
>seq30912
Length=2956
Score = 86.0 bits (94), Expect = 1e-11
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019
|| || ||||| | || ||||| || ||||| ||||||||||| || ||||||||
Sbjct 1559 CCTGCGAAGATAAGTCGCTGTTGATCCGGTGGAATTCCCTCCTTGTCCTGAATCTTTGCC 1618
Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079
|| ||| | ||||| ||||| || || || | || | ||||| || || || || | |
Sbjct 1619 TTCACGTTCTCGATCGTGTCGGACGCCTCCATCTCCAATGTGATTGTTTTGCCAGTTAGA 1678
Query 283080 GTCTTAACGAATATCTGCAT 283099
||||| ||||| |||| |||
Sbjct 1679 GTCTTCACGAAGATCTACAT 1698
>seq82153
Length=950
Score = 84.2 bits (92), Expect = 5e-11
Identities = 157/230 (68%), Gaps = 3/230 (1%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||||| || |||||||| || |||| || || || || || |||||||| || |
Sbjct 129 CCACCGCGAAGGCGAAGGACGAGATACAAGGTCGACTCGTTCTGTATGTTGTAATCCGAT 188
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| || | | || || | | || | |||||| || | || |||| ||
Sbjct 189 AGAGTATGACTGTCTTCCAACAGCTTGCGGGCAAAAATTAGGTACTGCTGGTGTGGGGGG 248
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
| || || ||||| |||||||| || || ||| | ||||| || ||||| ||||| |||
Sbjct 249 AAGCCTTCTTTGTCCTGGATCTTCGCCTTGACGCTTTCGATCGTATCCGACGCTTCCACT 308
Query 283053 TCGAGAGTGATCGTCTT---ACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| |||||||||||||| ||| ||| | | || || || || |||||
Sbjct 309 TCCAGAGTGATCGTCTTCCCTCCCATCACAATTTTGACAAAAATTTGCAT 358
>seq32511
Length=2827
Score = 84.2 bits (92), Expect = 5e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 282966 AAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACG 283025
||||| | || ||||| || ||||| ||||||||||| || |||||||| || |||
Sbjct 1586 AAGATAAGTCGCTGTTGATCCGGTGGAATTCCCTCCTTGTCCTGAATCTTTGCCTTGACG 1645
Query 283026 GTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTA 283085
| ||||| ||||| || || || | || | ||||| || || || || | ||||||
Sbjct 1646 TTCTCGATCGTGTCGGACGCCTCCATCTCCAATGTGATTGTTTTGCCAGTTAGAGTCTTC 1705
Query 283086 ACGAATATCTGCAT 283099
||||| |||| |||
Sbjct 1706 ACGAAGATCTACAT 1719
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1045017169762254
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