Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25] 128,401 sequences; 322,334,493 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq65209 174 3e-38 seq29780 158 3e-33 seq73431 125 1e-23 seq97776 122 2e-22 seq14519 122 2e-22 seq76917 109 1e-18 seq27460 98.7 2e-15 seq30912 86.0 1e-11 seq82153 84.2 5e-11 seq32511 84.2 5e-11 >seq65209 Length=1292 Score = 174 bits (192), Expect = 3e-38 Identities = 176/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 282871 AACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG 282930 ||||||| || |||||||| || ||||| || || ||| ||||||||||| || || | Sbjct 459 AACCACCGCGAAGGCGAAGGACGAGATGCAAAGTCGATTCCTTTTGGATGTTATAATCCG 518 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 | ||||| || ||||| | || || |||||||| || | |||||| || || | Sbjct 519 ACAAAGTGCGACCGTCCTCCAACTGCTTGCCGGCAAAAATAAGACGTTGCTGATCCGGAG 578 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 | |||||||| ||||| |||||||| || || ||| | || || |||||||| || || | Sbjct 579 GGATACCCTCTTTGTCCTGGATCTTCGCCTTAACGTTCTCAATGGTGTCCGATGCCTCCA 638 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||| |||||||| ||||| |||||||| || || ||||| |||||||| Sbjct 639 CTTCCAGAGTGATTGTCTTGCCCGTCAACGTTTTGACGAAAATCTGCAT 687 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || |||||||| | || || || || ||||| || || ||||| ||||||||||| Sbjct 961 CCAGCAAAGATAAGTCGCTGCTGATCTGGGGGAATGCCTTCTTTGTCCTGGATCTTTGCC 1020 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || ||| | || || ||||| || || || || || | ||||| ||||| || || | | Sbjct 1021 TTGACGTTTTCAATCGTGTCGGACGCCTCCACCTCCAATGTGATTGTCTTGCCGGTGAGA 1080 Query 283080 GTCTTAACGAATATCTGCAT 283099 ||||| ||||| || ||||| Sbjct 1081 GTCTTCACGAAAATTTGCAT 1100 >seq29780 Length=3062 Score = 158 bits (174), Expect = 3e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| || |||||||| || ||||| || || ||||| || ||||| || || | Sbjct 6 CCACCGCGAAGGCGAAGGACGAGATGCAAAGTCGACTCTTTCTGTATGTTATAATCCGAT 65 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| || || || || || || |||||||| || || || || || || || Sbjct 66 AGAGTGCGACCGTCTTCCAGCTGCTTGCCGGCAAAAATTAAGCGCTGCTGATCTGGGGGG 125 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || || ||||| |||||||| || || ||| | ||||| || ||||| ||||| ||| Sbjct 126 ATGCCTTCTTTGTCCTGGATCTTCGCCTTGACGTTTTCGATCGTATCCGACGCTTCCACT 185 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | |||||||||||| ||||||||||| || ||||| || ||||| Sbjct 186 TCCAAAGTGATCGTCTTCCCCGTCAAAGTTTTGACGAAAATTTGCAT 232 >seq73431 Length=1108 Score = 125 bits (138), Expect = 1e-23 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGT-GCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||| || | |||||| || |||||||| || | |||| | ||||||| || || | Sbjct 340 CCACTGCGAAAGCGAAGGACGAGATGTAAGGTCGACTTCTCCT-GGATGTTATAATCCGA 398 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||| || || || | || || || ||||| || || | || || || || Sbjct 399 TAGAGTGCGACCGTCTTCCAACTGCTTGCCAGCAAAAATTAAGCTCTGCTGATCTGGGGG 458 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || || |||| |||||||| || || ||| | ||||| || ||||| ||||| || Sbjct 459 GATGCCTTCTTTGTGCTGGATCTTCGCCTTGACGCTTTCGATCGTATCCGACGCTTCCAC 518 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| | |||||||||||| || |||||||| || ||||| || ||||| Sbjct 519 TTCAAAAGTGATCGTCTTCCCTGTCAAAGTTTTGACGAAAATTTGCAT 566 >seq97776 Length=741 Score = 122 bits (134), Expect = 2e-22 Identities = 93/110 (85%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 282990 GGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCG 283049 ||||||||||||||||| || ||||| ||||||||| | ||||| ||||| || |||||| Sbjct 138 GGAATACCCTCCTTGTCCTGAATCTTCGCTTTTACGTTCTCGATGGTGTCAGACGCTTCG 79 Query 283050 ACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| || ||||| || || || |||| |||||| ||||| |||||||| Sbjct 78 ACTTCCAGCGTGATGGTTTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 29 >seq14519 Length=5345 Score = 122 bits (134), Expect = 2e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 282963 GCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTT 283022 |||||||| | || || || || ||||||||||||||||| || ||||| ||||| Sbjct 4616 GCAAAGATAAGCCGCTGCTGATCCGGTGGAATACCCTCCTTGTCCTGAATCTTCGCTTTC 4557 Query 283023 ACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTC 283082 || | ||||| || || || ||||||||||| || ||||| || || || ||||||||| Sbjct 4556 ACATTTTCGATGGTATCTGACGCTTCGACTTCCAGCGTGATGGTTTTGCCAGTCAAAGTC 4497 Query 283083 TTAACGAATATCTGCAT 283099 || |||||||||||||| Sbjct 4496 TTGACGAATATCTGCAT 4480 Score = 104 bits (114), Expect = 5e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || |||||||| | || || || || ||||||||||||||||| || ||||| ||| Sbjct 5108 CCAGCAAAGATAAGCCGCTGCTGATCCGGTGGAATACCCTCCTTGTCCTGAATCTTCGCT 5049 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || | ||||| || || || || |||||||| || || || || || || |||| | Sbjct 5048 TTCACATTCTCGATGGTATCTGATGCCTCGACTTCCAGCGTAATGGTTTTGCCAGTCAGA 4989 Query 283080 GTCTTAACGAATATCTGCAT 283099 ||||| ||||| |||||||| Sbjct 4988 GTCTTCACGAAGATCTGCAT 4969 Score = 87.8 bits (96), Expect = 4e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || || ||||| | ||| |||||||| || || |||||||| ||||| ||||| ||| Sbjct 1407 CCAGCGAAGATGAGACGCTGTTGGTCTGGTGGGATTCCCTCCTTATCTTGTATCTTCGCT 1348 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 || || | ||||| || ||||| || || ||||| ||||||||||| || || || Sbjct 1347 TTCACATTCTCGATGGTATCCGAGGCCTCCACTTCCAGAGTGATCGTTTTTCCGGT 1292 Score = 86.0 bits (94), Expect = 1e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || || ||||| | ||| ||||| || || || |||||||| ||||| ||||| || Sbjct 2645 CCAGCGAAGATGAGACGCTGTTGATCTGGTGGGATTCCCTCCTTATCTTGTATCTTCGCC 2586 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || | ||||| || ||||| || || ||||| ||||||||||| ||||| || | | Sbjct 2585 TTCACATTCTCGATGGTATCCGAGGCCTCCACTTCCAGAGTGATCGTTTTACCGGTGAGA 2526 Query 283080 GT 283081 || Sbjct 2525 GT 2524 >seq76917 Length=1040 Score = 109 bits (120), Expect = 1e-18 Identities = 90/110 (82%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 282990 GGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCG 283049 ||||| |||||||||||||| |||||||| || ||| | ||||| ||||| || || || Sbjct 716 GGAATTCCCTCCTTGTCTTGAATCTTTGCCTTCACGTTCTCGATCGTGTCGGACGCCTCC 657 Query 283050 ACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| || ||||| ||||| || || | |||||| ||||| |||||||| Sbjct 656 ACTTCCAGTGTGATTGTCTTGCCAGTTAGAGTCTTCACGAAGATCTGCAT 607 Score = 104 bits (114), Expect = 5e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || || ||||| | ||||| || || |||||||| || ||||| || ||||| || Sbjct 407 CCTGCGAAGATAAGCCGTTGCTGATCCGGTGGAATACCTTCTTTGTCCTGAATCTTCGCC 348 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || ||| | ||||| ||||| || || || || || || ||||| || ||||| |||||| Sbjct 347 TTCACGTTCTCGATGGTGTCAGATGCCTCAACCTCCAGTGTGATGGTTTTACCGGTCAAA 288 Query 283080 GTCTTAACGAATATCTGCAT 283099 ||||| ||||| |||||||| Sbjct 287 GTCTTCACGAAGATCTGCAT 268 >seq27460 Length=3287 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 282956 TTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT 283015 ||| || |||||||||| |||||| || || ||| || || |||||||| || || || Sbjct 2234 TTTACCTGCAAAGATCAGACGTTGCTGATCCGGCGGGATGCCTTCCTTGTCCTGAATTTT 2293 Query 283016 TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 || || || | ||||| || ||||| | ||| || || || ||||||||||| || || Sbjct 2294 TGTCTTCACATTTTCGATGGTATCCGAGGATTCCACCTCAAGCGTGATCGTCTTGCCGGT 2353 Query 283076 CAAAGTCTTAACGAATATCTGCAT 283099 | ||||| ||||| || ||||| Sbjct 2354 TAGCGTCTTCACGAAGATTTGCAT 2377 >seq30912 Length=2956 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || || ||||| | || ||||| || ||||| ||||||||||| || |||||||| Sbjct 1559 CCTGCGAAGATAAGTCGCTGTTGATCCGGTGGAATTCCCTCCTTGTCCTGAATCTTTGCC 1618 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || ||| | ||||| ||||| || || || | || | ||||| || || || || | | Sbjct 1619 TTCACGTTCTCGATCGTGTCGGACGCCTCCATCTCCAATGTGATTGTTTTGCCAGTTAGA 1678 Query 283080 GTCTTAACGAATATCTGCAT 283099 ||||| ||||| |||| ||| Sbjct 1679 GTCTTCACGAAGATCTACAT 1698 >seq82153 Length=950 Score = 84.2 bits (92), Expect = 5e-11 Identities = 157/230 (68%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| || |||||||| || |||| || || || || || |||||||| || | Sbjct 129 CCACCGCGAAGGCGAAGGACGAGATACAAGGTCGACTCGTTCTGTATGTTGTAATCCGAT 188 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || | | || || | | || | |||||| || | || |||| || Sbjct 189 AGAGTATGACTGTCTTCCAACAGCTTGCGGGCAAAAATTAGGTACTGCTGGTGTGGGGGG 248 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 | || || ||||| |||||||| || || ||| | ||||| || ||||| ||||| ||| Sbjct 249 AAGCCTTCTTTGTCCTGGATCTTCGCCTTGACGCTTTCGATCGTATCCGACGCTTCCACT 308 Query 283053 TCGAGAGTGATCGTCTT---ACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || |||||||||||||| ||| ||| | | || || || || ||||| Sbjct 309 TCCAGAGTGATCGTCTTCCCTCCCATCACAATTTTGACAAAAATTTGCAT 358 >seq32511 Length=2827 Score = 84.2 bits (92), Expect = 5e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 282966 AAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACG 283025 ||||| | || ||||| || ||||| ||||||||||| || |||||||| || ||| Sbjct 1586 AAGATAAGTCGCTGTTGATCCGGTGGAATTCCCTCCTTGTCCTGAATCTTTGCCTTGACG 1645 Query 283026 GTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTA 283085 | ||||| ||||| || || || | || | ||||| || || || || | |||||| Sbjct 1646 TTCTCGATCGTGTCGGACGCCTCCATCTCCAATGTGATTGTTTTGCCAGTTAGAGTCTTC 1705 Query 283086 ACGAATATCTGCAT 283099 ||||| |||| ||| Sbjct 1706 ACGAAGATCTACAT 1719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1045017169762254