Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25] 128,401 sequences; 322,334,493 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq29780 114 9e-21 seq27460 111 1e-19 seq65209 109 4e-19 seq97776 89.7 4e-13 seq73431 87.8 1e-12 >seq29780 Length=3062 Score = 114 bits (126), Expect = 9e-21 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 ||| || || ||||| ||||| | || ||| |||| ||||||||||| |||||||| Sbjct 41 CTCTTTCTGTATGTTATAATCCGATAGAGTGCGACCGTCTTCCAGCTGCTTGCCGGCAAA 100 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 || || ||||||||||||| || | ||||| || ||| |||||| ||| | | Sbjct 101 AATTAAGCGCTGCTGATCTGGGGGGATGCCTTCTTTGTCCTGGATCTTCGCCTTGACGTT 160 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | | || || || | | |||||| |||| || |||||||| ||||| | || || || Sbjct 161 TTCGATCGTATCCGACGCTTCCACTTCCAAAGTGATCGTCTTCCCCGTCAAAGTTTTGAC 220 Query 44326 GAAGATTTGCATG 44338 ||| ||||||||| Sbjct 221 GAAAATTTGCATG 233 >seq27460 Length=3287 Score = 111 bits (122), Expect = 1e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 44195 TTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTC 44254 || || |||||||||| ||| |||||||| | || | |||||||| ||| || || Sbjct 2235 TTACCTGCAAAGATCAGACGTTGCTGATCCGGCGGGATGCCTTCCTTGTCCTGAATTTTT 2294 Query 44255 TGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTG 44314 ||||| || | ||||| || | |||||||||||| | ||| |||||||| || || Sbjct 2295 GTCTTCACATTTTCGATGGTATCCGAGGATTCCACCTCAAGCGTGATCGTCTTGCCGGTT 2354 Query 44315 AGGGTCTTCACGAAGATTTGCATG 44338 || ||||||||||||||||||||| Sbjct 2355 AGCGTCTTCACGAAGATTTGCATG 2378 >seq65209 Length=1292 Score = 109 bits (120), Expect = 4e-19 Identities = 141/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 |||||||||||||| ||||| | | ||| |||| |||| |||||| |||||||| Sbjct 497 TCCTTTTGGATGTTATAATCCGACAAAGTGCGACCGTCCTCCAACTGCTTGCCGGCAAAA 556 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 || | ||| |||||||| | ||| | ||| || || ||| |||||| || | || ||| Sbjct 557 ATAAGACGTTGCTGATCCGGAGGGATACCCTCTTTGTCCTGGATCTTC-GCCTTAACGTT 615 Query 44267 C-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | | |||||||| | | ||||| |||| || || ||||| ||||| | || || || Sbjct 616 CTCAATGGTGTCCGATGCCTCCACTTCCAGAGTGATTGTCTTGCCCGTCAACGTTTTGAC 675 Query 44326 GAAGATTTGCAT 44337 ||| || ||||| Sbjct 676 GAAAATCTGCAT 687 Score = 95.1 bits (104), Expect = 9e-15 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||| ||| | || |||||||| | ||||||||||||| || | ||||| || ||| Sbjct 951 CAGGTGCATACCAGCAAAGATAAGTCGCTGCTGATCTGGGGGAATGCCTTCTTTGTCCTG 1010 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | || | || ||||||| | |||||||||| || || ||||| Sbjct 1011 GATCTTTGCCTTGACGTTTTCAATCGTGTCGGACGCCTCCACCTCCAATGTGATTGTCTT 1070 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| ||||||||||| |||||||| Sbjct 1071 GCCGGTGAGAGTCTTCACGAAAATTTGCAT 1100 >seq97776 Length=741 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 || || ||||| | ||||||||||||| || | ||| ||||| ||| |||||| || Sbjct 168 CCTGCGAAGATAAGCCGCTGCTGATCTGGTGGAATACCCTCCTTGTCCTGAATCTTC-GC 110 Query 44258 TTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAG 44316 || | |||| | |||||||| | | ||| || |||| ||| || || || || || || Sbjct 109 TTTTACGTTCTCGATGGTGTCAGACGCTTCGACTTCCAGCGTGATGGTTTTGCCAGTCAG 50 Query 44317 GGTCTTCACGAAGATTTGCAT 44337 |||||||||||||| ||||| Sbjct 49 AGTCTTCACGAAGATCTGCAT 29 >seq73431 Length=1108 Score = 87.8 bits (96), Expect = 1e-12 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 44153 TGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAA 44212 |||||||| ||||| | || ||| |||| |||| |||||| || ||||| || || Sbjct 382 TGGATGTTATAATCCGATAGAGTGCGACCGTCTTCCAACTGCTTGCCAGCAAAAATTAAG 441 Query 44213 CGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATG 44272 | ||||||||||| || | ||||| || | | |||||| ||| | || | || Sbjct 442 CTCTGCTGATCTGGGGGGATGCCTTCTTTGTGCTGGATCTTCGCCTTGACGCTTTCGATC 501 Query 44273 GTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATT 44332 || || | | |||||| || | || |||||||| || || | || || ||||| ||| Sbjct 502 GTATCCGACGCTTCCACTTCAAAAGTGATCGTCTTCCCTGTCAAAGTTTTGACGAAAATT 561 Query 44333 TGCATG 44338 |||||| Sbjct 562 TGCATG 567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359427055635417