Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25]
128,401 sequences; 322,334,493 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq65209 150 4e-31
seq29780 147 5e-30
seq27460 127 5e-24
seq76917 125 2e-23
seq32511 118 3e-21
seq97776 116 9e-21
seq73431 116 9e-21
seq30912 116 9e-21
seq14519 104 6e-17
seq19432 98.7 2e-15
seq35238 95.1 3e-14
>seq65209
Length=1292
Score = 150 bits (166), Expect = 4e-31
Identities = 157/206 (76%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| ||||| | || || || || ||||| || || ||||| || |||
Sbjct 684 CAGATTTTCGTCAAAACGTTGACGGGCAAGACAATCACTCTGGAAGTGGAGGCATCGGAC 625
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| |||||||| || ||||| ||||||||||| || ||||||||||| ||||||
Sbjct 624 ACCATTGAGAACGTTAAGGCGAAGATCCAGGACAAAGAGGGTATCCCTCCGGATCAGCAA 565
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| ||||| || ||||| || ||| | || || || | ||| | | ||||||||| ||
Sbjct 564 CGTCTTATTTTTGCCGGCAAGCAGTTGGAGGACGGTCGCACTTTGTCGGATTATAACATC 505
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
||||| ||||| || ||||||| ||
Sbjct 504 CAAAAGGAATCGACTTTGCATCTCGT 479
Score = 122 bits (134), Expect = 2e-22
Identities = 109/137 (80%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||||||||| |||||||| || || || ||||| | |||||||| || |||
Sbjct 1097 CAAATTTTCGTGAAGACTCTCACCGGCAAGACAATCACATTGGAGGTGGAGGCGTCCGAC 1038
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || |||||||| |||||| |||||||||||||| || || || || |||||
Sbjct 1037 ACGATTGAAAACGTCAAGGCAAAGATCCAGGACAAAGAAGGCATTCCCCCAGATCAGCAG 978
Query 178044 CGACTTATCTTCGCCGG 178060
||||||||||| || ||
Sbjct 977 CGACTTATCTTTGCTGG 961
>seq29780
Length=3062
Score = 147 bits (162), Expect = 5e-30
Identities = 156/206 (76%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||||||||| |||||| | || || || |||||||| | || |||||| || ||
Sbjct 229 CAAATTTTCGTCAAAACTTTGACGGGGAAGACGATCACTTTGGAAGTGGAAGCGTCGGAT 170
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| |||||||| ||||| |||||||||||||| ||||| || || |||||
Sbjct 169 ACGATCGAAAACGTCAAGGCGAAGATCCAGGACAAAGAAGGCATCCCCCCAGATCAGCAG 110
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | || || ||||| || ||||| ||||| || | ||||| | ||||||||| |
Sbjct 109 CGCTTAATTTTTGCCGGCAAGCAGCTGGAAGACGGTCGCACTCTATCGGATTATAACATA 50
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| ||||| || || ||||||| ||
Sbjct 49 CAGAAAGAGTCGACTTTGCATCTCGT 24
Score = 113 bits (124), Expect = 1e-19
Identities = 107/137 (78%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||| || |||||||| || || ||||| ||||| || || ||||| || |||
Sbjct 644 CAGATTTTTGTTAAAACTCTGACCGGCAAAACAATCACTCTGGAAGTGGAGCCGTCCGAC 585
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||||||||| || |||||||||||||| ||||| || ||||| || |||||
Sbjct 584 ACGATCGAGAACGTAAAGGCGAAGATTCAGGACAAGGAAGGCATTCCTCCTGATCAGCAG 525
Query 178044 CGACTTATCTTCGCCGG 178060
|| ||||| ||||| ||
Sbjct 524 CGTCTTATTTTCGCTGG 508
>seq27460
Length=3287
Score = 127 bits (140), Expect = 5e-24
Identities = 115/142 (81%), Gaps = 2/142 (1%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| |||||||| || || || || || |||||||| || ||||||||| ||| ||
Sbjct 2374 CAAATCTTCGTGAAGACGCTAACCGGCAAGACGATCACGCTTGAGGTGGAATCCTCGGAT 2315
Query 177984 ACCATCGAGAACGTCAA-ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042
|||||||| || || || |||||| ||||||||||| ||||| ||||| ||||| |||||
Sbjct 2314 ACCATCGAAAATGTGAAGACAAAA-ATTCAGGACAAGGAAGGCATCCCGCCGGATCAGCA 2256
Query 178043 ACGACTTATCTTCGCCGGAAAA 178064
||| || ||||| || || |||
Sbjct 2255 ACGTCTGATCTTTGCAGGTAAA 2234
>seq76917
Length=1040
Score = 125 bits (138), Expect = 2e-23
Identities = 110/137 (80%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || |||||||| ||| | || || ||||| ||||| || ||||| || || |||
Sbjct 271 CAGATCTTCGTGAAGACTTTGACCGGTAAAACCATCACACTGGAGGTTGAGGCATCTGAC 330
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||||||||| || |||||||||||||||||||| || || ||||| ||||||
Sbjct 331 ACCATCGAGAACGTGAAGGCGAAGATTCAGGACAAAGAAGGTATTCCACCGGATCAGCAA 390
Query 178044 CGACTTATCTTCGCCGG 178060
|| ||||||||||| ||
Sbjct 391 CGGCTTATCTTCGCAGG 407
Score = 116 bits (128), Expect = 9e-21
Identities = 108/137 (79%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || |||||||| ||||| || || || || ||||| || || ||||| || |||
Sbjct 610 CAGATCTTCGTGAAGACTCTAACTGGCAAGACAATCACACTGGAAGTGGAGGCGTCCGAC 669
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||||||||| || ||||||||| ||||| || ||||| || ||||| |||||
Sbjct 670 ACGATCGAGAACGTGAAGGCAAAGATTCAAGACAAGGAGGGAATTCCACCGGATCAGCAG 729
Query 178044 CGACTTATCTTCGCCGG 178060
|||||||||||||| ||
Sbjct 730 CGACTTATCTTCGCAGG 746
>seq32511
Length=2827
Score = 118 bits (130), Expect = 3e-21
Identities = 104/130 (80%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 177927 ATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACC 177986
|| |||||||| ||||| || || ||||| ||||| | ||| |||| || |||||
Sbjct 1713 ATCTTCGTGAAGACTCTAACTGGCAAAACAATCACATTGGAGATGGAGGCGTCCGACACG 1654
Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046
|||||||||||||| ||||||||||||||| || ||||| || ||||| || || |||
Sbjct 1653 ATCGAGAACGTCAAGGCAAAGATTCAGGACAAGGAGGGAATTCCACCGGATCAACAGCGA 1594
Query 178047 CTTATCTTCG 178056
||||||||||
Sbjct 1593 CTTATCTTCG 1584
Score = 89.7 bits (98), Expect = 1e-12
Identities = 79/99 (80%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 177957 ATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGAC 178016
||||| || ||| | ||| || ||||||||||||||||| || ||||||||||| |
Sbjct 2026 ATCACACTGGAGATTGAATTATCTGACACCATCGAGAACGTTAAGGTAAAGATTCAGGGC 1967
Query 178017 AAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTC 178055
|| || || || || ||||| |||||||| |||||||||
Sbjct 1966 AAGGAGGGCATTCCACCGGATCAGCAACGGCTTATCTTC 1928
Score = 86.0 bits (94), Expect = 2e-11
Identities = 91/119 (76%), Gaps = 1/119 (1%)
Strand=Plus/Minus
Query 178008 ATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAG 178067
|| |||| ||||||||| |||| ||||||||||||||| || || || ||||| || |||
Sbjct 1271 ATCCAGGGCAAAGAAGGTATCCTTCCGGACCAGCAACGTCTAATTTTTGCCGGCAAGCAG 1212
Query 178068 CTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCT 178126
| || || | | ||| | | |||| |||| ||||||| ||||| || |||||||
Sbjct 1211 TTGGAGGACGATCGCACTTTATCGGATTTTAACATCCAAAAGGAATCGAC-TTGCATCT 1154
>seq97776
Length=741
Score = 116 bits (128), Expect = 9e-21
Identities = 108/137 (79%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || |||||||| ||||| || || ||||| ||||| || || || ||| || |||
Sbjct 32 CAGATCTTCGTGAAGACTCTGACTGGCAAAACCATCACGCTGGAAGTCGAAGCGTCTGAC 91
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||||||||| ||| |||||||||||||| || || || || || || |||||
Sbjct 92 ACCATCGAGAACGTAAAAGCGAAGATTCAGGACAAGGAGGGTATTCCACCAGATCAGCAG 151
Query 178044 CGACTTATCTTCGCCGG 178060
|| ||||||||||| ||
Sbjct 152 CGGCTTATCTTCGCAGG 168
>seq73431
Length=1108
Score = 116 bits (128), Expect = 9e-21
Identities = 135/182 (74%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||||||||| |||||| | ||||| || |||||||| | || |||||| || ||
Sbjct 563 CAAATTTTCGTCAAAACTTTGACAGGGAAGACGATCACTTTTGAAGTGGAAGCGTCGGAT 504
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| | |||||| ||||| ||| |||||||||| ||||| || || |||||
Sbjct 503 ACGATCGAAAGCGTCAAGGCGAAGATCCAGCACAAAGAAGGCATCCCCCCAGATCAGCAG 444
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
| | || || || || || ||| | ||||| || | ||||| | ||||||||| ||
Sbjct 443 AGCTTAATTTTTGCTGGCAAGCAGTTGGAAGACGGTCGCACTCTATCGGATTATAACATC 384
Query 178104 CA 178105
||
Sbjct 383 CA 382
>seq30912
Length=2956
Score = 116 bits (128), Expect = 9e-21
Identities = 106/134 (79%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 177927 ATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACC 177986
|| |||||||| ||||| || || ||||| ||||| | ||| |||| || |||||
Sbjct 1692 ATCTTCGTGAAGACTCTAACTGGCAAAACAATCACATTGGAGATGGAGGCGTCCGACACG 1633
Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046
||||||||||| || ||||||||||||||| || ||||| || ||||| || || |||
Sbjct 1632 ATCGAGAACGTGAAGGCAAAGATTCAGGACAAGGAGGGAATTCCACCGGATCAACAGCGA 1573
Query 178047 CTTATCTTCGCCGG 178060
||||||||||| ||
Sbjct 1572 CTTATCTTCGCAGG 1559
>seq14519
Length=5345
Score = 104 bits (114), Expect = 6e-17
Identities = 105/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || |||||||| ||||| || || ||||| || || || || || || |||||
Sbjct 4972 CAGATCTTCGTGAAGACTCTGACTGGCAAAACCATTACGCTGGAAGTCGAGGCATCAGAT 5031
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||||||||| || ||| |||||||||||||| || || || || ||||| |||||
Sbjct 5032 ACCATCGAGAATGTGAAAGCGAAGATTCAGGACAAGGAGGGTATTCCACCGGATCAGCAG 5091
Query 178044 CGACTTATCTTCGCCGG 178060
|| |||||||| || ||
Sbjct 5092 CGGCTTATCTTTGCTGG 5108
Score = 98.7 bits (108), Expect = 2e-15
Identities = 95/122 (78%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 177939 ACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTC 177998
|| ||||| |||||||||||||| || || ||||| ||| || ||||||||||| ||
Sbjct 1286 ACCCTCACCGGAAAAACGATCACTCTGGAAGTGGAGGCCTCGGATACCATCGAGAATGTG 1345
Query 177999 AAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCC 178058
||| ||||| || || || || |||||||| || ||||| || || || ||||||||
Sbjct 1346 AAAGCGAAGATACAAGATAAGGAGGGAATCCCACCAGACCAACAGCGTCTCATCTTCGCT 1405
Query 178059 GG 178060
||
Sbjct 1406 GG 1407
Score = 98.7 bits (108), Expect = 2e-15
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || ||| | || || ||||| ||||| || || || ||| |||||
Sbjct 4483 CAGATATTCGTCAAGACTTTGACTGGCAAAACCATCACGCTGGAAGTCGAAGCGTCAGAT 4542
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || || ||| |||||||||||||| || || || || ||||| |||||
Sbjct 4543 ACCATCGAAAATGTGAAAGCGAAGATTCAGGACAAGGAGGGTATTCCACCGGATCAGCAG 4602
Query 178044 CGACTTATCTTCGC 178057
|| |||||||| ||
Sbjct 4603 CGGCTTATCTTTGC 4616
Score = 95.1 bits (104), Expect = 3e-14
Identities = 103/137 (75%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||| || ||||| | || || ||||||||||| | ||||| || || ||
Sbjct 3913 CAAATTTTTGTAAAAACCTTAACGGGTAAAACGATCACTTTGGAGGTAGAGGCATCGGAT 3972
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || ||| || |||||||||||||| || ||||||||||| |||||
Sbjct 3973 ACGATTGAAAATGTTAAAGCGAAAATTCAGGACAAAGAGGGCATCCCTCCGGATCAGCAG 4032
Query 178044 CGACTTATCTTCGCCGG 178060
|| || ||||| || ||
Sbjct 4033 CGCCTCATCTTTGCTGG 4049
Score = 91.5 bits (100), Expect = 4e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||||||||| ||||| || || || || || ||||||||||| || ||
Sbjct 803 CAGATTTTCGTGAAAACGCTCACTGGCAAGACAATTACTCTCGAGGTGGAGGCATCGGAT 862
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || ||||| || || ||||| ||||| || || || || || || || |||||
Sbjct 863 ACTATTGAGAATGTGAAGGCGAAGATCCAGGATAAGGAGGGCATACCGCCAGATCAGCAG 922
Query 178044 CGACTTATCTTCGCCGGAAA 178063
|| || || |||||||| ||
Sbjct 923 CGCCTCATTTTCGCCGGTAA 942
Score = 91.5 bits (100), Expect = 4e-13
Identities = 94/123 (76%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 177938 AACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGT 177997
||||||||| || ||||||||||| || || ||||| ||| || ||||||||||| ||
Sbjct 2523 AACTCTCACCGGTAAAACGATCACTCTGGAAGTGGAGGCCTCGGATACCATCGAGAATGT 2582
Query 177998 CAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGC 178057
|| ||||| || || || || |||||||| || || || || || || ||||||||
Sbjct 2583 GAAGGCGAAGATACAAGATAAGGAGGGAATCCCACCAGATCAACAGCGTCTCATCTTCGC 2642
Query 178058 CGG 178060
||
Sbjct 2643 TGG 2645
>seq19432
Length=4349
Score = 98.7 bits (108), Expect = 2e-15
Identities = 95/122 (78%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||| |||||||| ||||| || ||||||||||| || |||||||| || ||
Sbjct 2053 CAGATTTATGTGAAAACGCTCACTGGCAAAACGATCACTCTGGAGGTGGAGGCATCGGAT 1994
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| ||||| || || |||||| |||||||| ||||| || || ||||| |||||
Sbjct 1993 ACCATTGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGCATACCACCGGATCAGCAG 1934
Query 178044 CG 178045
||
Sbjct 1933 CG 1932
>seq35238
Length=2610
Score = 95.1 bits (104), Expect = 3e-14
Identities = 85/107 (79%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 177954 ACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAG 178013
|||||||| |||||||| || || ||||||||| ||||||| || ||||| |||
Sbjct 2 ACGATCACGCTCGAGGTCGAGTCGTCGGACACCATCCAGAACGTGAAGGCGAAGATCCAG 61
Query 178014 GACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGG 178060
||||| || || ||||| ||||||||||| || || |||||||| ||
Sbjct 62 GACAAGGAGGGCATCCCGCCGGACCAGCAGCGCCTCATCTTCGCAGG 108
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1201750896286794
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |