Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25] 128,401 sequences; 322,334,493 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq65209 150 4e-31 seq29780 147 5e-30 seq27460 127 5e-24 seq76917 125 2e-23 seq32511 118 3e-21 seq97776 116 9e-21 seq73431 116 9e-21 seq30912 116 9e-21 seq14519 104 6e-17 seq19432 98.7 2e-15 seq35238 95.1 3e-14 >seq65209 Length=1292 Score = 150 bits (166), Expect = 4e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| ||||| | || || || || ||||| || || ||||| || ||| Sbjct 684 CAGATTTTCGTCAAAACGTTGACGGGCAAGACAATCACTCTGGAAGTGGAGGCATCGGAC 625 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| |||||||| || ||||| ||||||||||| || ||||||||||| |||||| Sbjct 624 ACCATTGAGAACGTTAAGGCGAAGATCCAGGACAAAGAGGGTATCCCTCCGGATCAGCAA 565 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||| || ||||| || ||| | || || || | ||| | | ||||||||| || Sbjct 564 CGTCTTATTTTTGCCGGCAAGCAGTTGGAGGACGGTCGCACTTTGTCGGATTATAACATC 505 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||| ||||| || ||||||| || Sbjct 504 CAAAAGGAATCGACTTTGCATCTCGT 479 Score = 122 bits (134), Expect = 2e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||||||||| |||||||| || || || ||||| | |||||||| || ||| Sbjct 1097 CAAATTTTCGTGAAGACTCTCACCGGCAAGACAATCACATTGGAGGTGGAGGCGTCCGAC 1038 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| |||||| |||||||||||||| || || || || ||||| Sbjct 1037 ACGATTGAAAACGTCAAGGCAAAGATCCAGGACAAAGAAGGCATTCCCCCAGATCAGCAG 978 Query 178044 CGACTTATCTTCGCCGG 178060 ||||||||||| || || Sbjct 977 CGACTTATCTTTGCTGG 961 >seq29780 Length=3062 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| |||||| | || || || |||||||| | || |||||| || || Sbjct 229 CAAATTTTCGTCAAAACTTTGACGGGGAAGACGATCACTTTGGAAGTGGAAGCGTCGGAT 170 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| ||||| |||||||||||||| ||||| || || ||||| Sbjct 169 ACGATCGAAAACGTCAAGGCGAAGATCCAGGACAAAGAAGGCATCCCCCCAGATCAGCAG 110 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || ||||| || ||||| ||||| || | ||||| | ||||||||| | Sbjct 109 CGCTTAATTTTTGCCGGCAAGCAGCTGGAAGACGGTCGCACTCTATCGGATTATAACATA 50 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || ||||| || || ||||||| || Sbjct 49 CAGAAAGAGTCGACTTTGCATCTCGT 24 Score = 113 bits (124), Expect = 1e-19 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || |||||||| || || ||||| ||||| || || ||||| || ||| Sbjct 644 CAGATTTTTGTTAAAACTCTGACCGGCAAAACAATCACTCTGGAAGTGGAGCCGTCCGAC 585 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||||||| || |||||||||||||| ||||| || ||||| || ||||| Sbjct 584 ACGATCGAGAACGTAAAGGCGAAGATTCAGGACAAGGAAGGCATTCCTCCTGATCAGCAG 525 Query 178044 CGACTTATCTTCGCCGG 178060 || ||||| ||||| || Sbjct 524 CGTCTTATTTTCGCTGG 508 >seq27460 Length=3287 Score = 127 bits (140), Expect = 5e-24 Identities = 115/142 (81%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||| || || || || || |||||||| || ||||||||| ||| || Sbjct 2374 CAAATCTTCGTGAAGACGCTAACCGGCAAGACGATCACGCTTGAGGTGGAATCCTCGGAT 2315 Query 177984 ACCATCGAGAACGTCAA-ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 |||||||| || || || |||||| ||||||||||| ||||| ||||| ||||| ||||| Sbjct 2314 ACCATCGAAAATGTGAAGACAAAA-ATTCAGGACAAGGAAGGCATCCCGCCGGATCAGCA 2256 Query 178043 ACGACTTATCTTCGCCGGAAAA 178064 ||| || ||||| || || ||| Sbjct 2255 ACGTCTGATCTTTGCAGGTAAA 2234 >seq76917 Length=1040 Score = 125 bits (138), Expect = 2e-23 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| ||| | || || ||||| ||||| || ||||| || || ||| Sbjct 271 CAGATCTTCGTGAAGACTTTGACCGGTAAAACCATCACACTGGAGGTTGAGGCATCTGAC 330 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| || |||||||||||||||||||| || || ||||| |||||| Sbjct 331 ACCATCGAGAACGTGAAGGCGAAGATTCAGGACAAAGAAGGTATTCCACCGGATCAGCAA 390 Query 178044 CGACTTATCTTCGCCGG 178060 || ||||||||||| || Sbjct 391 CGGCTTATCTTCGCAGG 407 Score = 116 bits (128), Expect = 9e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| ||||| || || || || ||||| || || ||||| || ||| Sbjct 610 CAGATCTTCGTGAAGACTCTAACTGGCAAGACAATCACACTGGAAGTGGAGGCGTCCGAC 669 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||||||| || ||||||||| ||||| || ||||| || ||||| ||||| Sbjct 670 ACGATCGAGAACGTGAAGGCAAAGATTCAAGACAAGGAGGGAATTCCACCGGATCAGCAG 729 Query 178044 CGACTTATCTTCGCCGG 178060 |||||||||||||| || Sbjct 730 CGACTTATCTTCGCAGG 746 >seq32511 Length=2827 Score = 118 bits (130), Expect = 3e-21 Identities = 104/130 (80%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 177927 ATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACC 177986 || |||||||| ||||| || || ||||| ||||| | ||| |||| || ||||| Sbjct 1713 ATCTTCGTGAAGACTCTAACTGGCAAAACAATCACATTGGAGATGGAGGCGTCCGACACG 1654 Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046 |||||||||||||| ||||||||||||||| || ||||| || ||||| || || ||| Sbjct 1653 ATCGAGAACGTCAAGGCAAAGATTCAGGACAAGGAGGGAATTCCACCGGATCAACAGCGA 1594 Query 178047 CTTATCTTCG 178056 |||||||||| Sbjct 1593 CTTATCTTCG 1584 Score = 89.7 bits (98), Expect = 1e-12 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 177957 ATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGAC 178016 ||||| || ||| | ||| || ||||||||||||||||| || ||||||||||| | Sbjct 2026 ATCACACTGGAGATTGAATTATCTGACACCATCGAGAACGTTAAGGTAAAGATTCAGGGC 1967 Query 178017 AAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTC 178055 || || || || || ||||| |||||||| ||||||||| Sbjct 1966 AAGGAGGGCATTCCACCGGATCAGCAACGGCTTATCTTC 1928 Score = 86.0 bits (94), Expect = 2e-11 Identities = 91/119 (76%), Gaps = 1/119 (1%) Strand=Plus/Minus Query 178008 ATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAG 178067 || |||| ||||||||| |||| ||||||||||||||| || || || ||||| || ||| Sbjct 1271 ATCCAGGGCAAAGAAGGTATCCTTCCGGACCAGCAACGTCTAATTTTTGCCGGCAAGCAG 1212 Query 178068 CTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCT 178126 | || || | | ||| | | |||| |||| ||||||| ||||| || ||||||| Sbjct 1211 TTGGAGGACGATCGCACTTTATCGGATTTTAACATCCAAAAGGAATCGAC-TTGCATCT 1154 >seq97776 Length=741 Score = 116 bits (128), Expect = 9e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| ||||| || || ||||| ||||| || || || ||| || ||| Sbjct 32 CAGATCTTCGTGAAGACTCTGACTGGCAAAACCATCACGCTGGAAGTCGAAGCGTCTGAC 91 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| ||| |||||||||||||| || || || || || || ||||| Sbjct 92 ACCATCGAGAACGTAAAAGCGAAGATTCAGGACAAGGAGGGTATTCCACCAGATCAGCAG 151 Query 178044 CGACTTATCTTCGCCGG 178060 || ||||||||||| || Sbjct 152 CGGCTTATCTTCGCAGG 168 >seq73431 Length=1108 Score = 116 bits (128), Expect = 9e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| |||||| | ||||| || |||||||| | || |||||| || || Sbjct 563 CAAATTTTCGTCAAAACTTTGACAGGGAAGACGATCACTTTTGAAGTGGAAGCGTCGGAT 504 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| | |||||| ||||| ||| |||||||||| ||||| || || ||||| Sbjct 503 ACGATCGAAAGCGTCAAGGCGAAGATCCAGCACAAAGAAGGCATCCCCCCAGATCAGCAG 444 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | || || || || || ||| | ||||| || | ||||| | ||||||||| || Sbjct 443 AGCTTAATTTTTGCTGGCAAGCAGTTGGAAGACGGTCGCACTCTATCGGATTATAACATC 384 Query 178104 CA 178105 || Sbjct 383 CA 382 >seq30912 Length=2956 Score = 116 bits (128), Expect = 9e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 177927 ATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACC 177986 || |||||||| ||||| || || ||||| ||||| | ||| |||| || ||||| Sbjct 1692 ATCTTCGTGAAGACTCTAACTGGCAAAACAATCACATTGGAGATGGAGGCGTCCGACACG 1633 Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046 ||||||||||| || ||||||||||||||| || ||||| || ||||| || || ||| Sbjct 1632 ATCGAGAACGTGAAGGCAAAGATTCAGGACAAGGAGGGAATTCCACCGGATCAACAGCGA 1573 Query 178047 CTTATCTTCGCCGG 178060 ||||||||||| || Sbjct 1572 CTTATCTTCGCAGG 1559 >seq14519 Length=5345 Score = 104 bits (114), Expect = 6e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| ||||| || || ||||| || || || || || || ||||| Sbjct 4972 CAGATCTTCGTGAAGACTCTGACTGGCAAAACCATTACGCTGGAAGTCGAGGCATCAGAT 5031 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || ||| |||||||||||||| || || || || ||||| ||||| Sbjct 5032 ACCATCGAGAATGTGAAAGCGAAGATTCAGGACAAGGAGGGTATTCCACCGGATCAGCAG 5091 Query 178044 CGACTTATCTTCGCCGG 178060 || |||||||| || || Sbjct 5092 CGGCTTATCTTTGCTGG 5108 Score = 98.7 bits (108), Expect = 2e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 177939 ACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTC 177998 || ||||| |||||||||||||| || || ||||| ||| || ||||||||||| || Sbjct 1286 ACCCTCACCGGAAAAACGATCACTCTGGAAGTGGAGGCCTCGGATACCATCGAGAATGTG 1345 Query 177999 AAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCC 178058 ||| ||||| || || || || |||||||| || ||||| || || || |||||||| Sbjct 1346 AAAGCGAAGATACAAGATAAGGAGGGAATCCCACCAGACCAACAGCGTCTCATCTTCGCT 1405 Query 178059 GG 178060 || Sbjct 1406 GG 1407 Score = 98.7 bits (108), Expect = 2e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||| | || || ||||| ||||| || || || ||| ||||| Sbjct 4483 CAGATATTCGTCAAGACTTTGACTGGCAAAACCATCACGCTGGAAGTCGAAGCGTCAGAT 4542 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || ||| |||||||||||||| || || || || ||||| ||||| Sbjct 4543 ACCATCGAAAATGTGAAAGCGAAGATTCAGGACAAGGAGGGTATTCCACCGGATCAGCAG 4602 Query 178044 CGACTTATCTTCGC 178057 || |||||||| || Sbjct 4603 CGGCTTATCTTTGC 4616 Score = 95.1 bits (104), Expect = 3e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| | || || ||||||||||| | ||||| || || || Sbjct 3913 CAAATTTTTGTAAAAACCTTAACGGGTAAAACGATCACTTTGGAGGTAGAGGCATCGGAT 3972 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || |||||||||||||| || ||||||||||| ||||| Sbjct 3973 ACGATTGAAAATGTTAAAGCGAAAATTCAGGACAAAGAGGGCATCCCTCCGGATCAGCAG 4032 Query 178044 CGACTTATCTTCGCCGG 178060 || || ||||| || || Sbjct 4033 CGCCTCATCTTTGCTGG 4049 Score = 91.5 bits (100), Expect = 4e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| ||||| || || || || || ||||||||||| || || Sbjct 803 CAGATTTTCGTGAAAACGCTCACTGGCAAGACAATTACTCTCGAGGTGGAGGCATCGGAT 862 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || || ||||| ||||| || || || || || || || ||||| Sbjct 863 ACTATTGAGAATGTGAAGGCGAAGATCCAGGATAAGGAGGGCATACCGCCAGATCAGCAG 922 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || || || |||||||| || Sbjct 923 CGCCTCATTTTCGCCGGTAA 942 Score = 91.5 bits (100), Expect = 4e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 177938 AACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGT 177997 ||||||||| || ||||||||||| || || ||||| ||| || ||||||||||| || Sbjct 2523 AACTCTCACCGGTAAAACGATCACTCTGGAAGTGGAGGCCTCGGATACCATCGAGAATGT 2582 Query 177998 CAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGC 178057 || ||||| || || || || |||||||| || || || || || || |||||||| Sbjct 2583 GAAGGCGAAGATACAAGATAAGGAGGGAATCCCACCAGATCAACAGCGTCTCATCTTCGC 2642 Query 178058 CGG 178060 || Sbjct 2643 TGG 2645 >seq19432 Length=4349 Score = 98.7 bits (108), Expect = 2e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||| |||||||| ||||| || ||||||||||| || |||||||| || || Sbjct 2053 CAGATTTATGTGAAAACGCTCACTGGCAAAACGATCACTCTGGAGGTGGAGGCATCGGAT 1994 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || || |||||| |||||||| ||||| || || ||||| ||||| Sbjct 1993 ACCATTGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGCATACCACCGGATCAGCAG 1934 Query 178044 CG 178045 || Sbjct 1933 CG 1932 >seq35238 Length=2610 Score = 95.1 bits (104), Expect = 3e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 177954 ACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAG 178013 |||||||| |||||||| || || ||||||||| ||||||| || ||||| ||| Sbjct 2 ACGATCACGCTCGAGGTCGAGTCGTCGGACACCATCCAGAACGTGAAGGCGAAGATCCAG 61 Query 178014 GACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGG 178060 ||||| || || ||||| ||||||||||| || || |||||||| || Sbjct 62 GACAAGGAGGGCATCCCGCCGGACCAGCAGCGCCTCATCTTCGCAGG 108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1201750896286794