Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25]
128,401 sequences; 322,334,493 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq29780 105 6e-18
seq65209 98.7 9e-16
>seq29780
Length=3062
Score = 105 bits (116), Expect = 6e-18
Identities = 163/230 (71%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| ||||| || || | || ||||||| || ||| ||||| |||||||| || ||
Sbjct 5 GCCACCGCGAAGGCGAAGGACGAGATGCAAAGTCGACTCTTTCTGTATGTTATAATCCGA 64
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|| ||||| |||| || |||||||||||||| || || | |||||| || || | |||
Sbjct 65 TAGAGTGCGACCGTCTTCCAGCTGCTTGCCGGCAAAAATTAAGCGCTGCTGATCTGGGGG 124
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
| || || |||||| || | || || | ||| | | || || || ||||
Sbjct 125 GATGCCTTCTTTGTCC-TGGATCTTCGCCTTGACGTTTTCGATCGTATCCGACGCTTCCA 183
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
| |||| || ||||| || ||||||| || || |||||||| ||||||
Sbjct 184 CTTCCAAAGTGATCGTCTTCCCCGTCAAAGTTTTGACGAAAATTTGCATG 233
>seq65209
Length=1292
Score = 98.7 bits (108), Expect = 9e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| || || | || ||||||| || ||||| || |||||||| || ||
Sbjct 461 CCACCGCGAAGGCGAAGGACGAGATGCAAAGTCGATTCCTTTTGGATGTTATAATCCGAC 520
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
| ||||| |||| || | |||||||||||| || || || || || || |||| ||
Sbjct 521 AAAGTGCGACCGTCCTCCAACTGCTTGCCGGCAAAAATAAGACGTTGCTGATCCGGAGGG 580
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCAC 41814
| | ||| |||||| || | || || | |||| | | ||||| | ||||||
Sbjct 581 ATACCCTCTTTGTCC-TGGATCTTCGCCTTAACGTTCTCAATGGTGTCCGATGCCTCCAC 639
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||| || || || || ||||||| ||| || ||||||||||||||
Sbjct 640 TTCCAGAGTGATTGTCTTGCCCGTCAACGTTTTGACGAAAATCTGCAT 687
Score = 89.7 bits (98), Expect = 5e-13
Identities = 75/92 (82%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
||||||||||| || ||||||||||| ||||| ||||||||| |||||||| || ||
Sbjct 1102 CCGCCGCGTAGCCGCAACACCAGATGAAGCGTCGACTCCTTCTGGATGTTATAATCCGAC 1161
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGC 41727
|| || || | || |||||||||||||| ||
Sbjct 1162 AGAGTTCGACCATCCTCGAGCTGCTTGCCTGC 1193
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 461561996301200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |