Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27]
12,915 sequences; 319,757,902 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq11403 84.2 5e-11
seq5408 84.2 5e-11
seq4018 84.2 5e-11
>seq11403
Length=120023
Score = 84.2 bits (92), Expect = 5e-11
Identities = 57/64 (89%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768
|||||| |||||||||||||||||| ||||||| ||||||||| |||| |||||||||
Sbjct 39790 TGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 39731
Query 165769 CCCC 165772
||||
Sbjct 39730 CCCC 39727
>seq5408
Length=229914
Score = 84.2 bits (92), Expect = 5e-11
Identities = 57/64 (89%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768
|||||| |||||||||||||||||| ||||||| ||||||||| |||| |||||||||
Sbjct 47467 TGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 47408
Query 165769 CCCC 165772
||||
Sbjct 47407 CCCC 47404
>seq4018
Length=65016
Score = 84.2 bits (92), Expect = 5e-11
Identities = 57/64 (89%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768
|||||| |||||||||||||||||| ||||||| ||||||||| |||| |||||||||
Sbjct 10566 TGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 10507
Query 165769 CCCC 165772
||||
Sbjct 10506 CCCC 10503
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057648958226450
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |