Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq899 93.3 5e-14 seq7663 82.4 9e-11 >seq899 Length=82215 Score = 93.3 bits (102), Expect = 5e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 54424 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 54483 |||||||||||| || | || |||||||| || || || || ||| | ||||| Sbjct 22600 AGTTCCCGCATTGAAAAGCGTGGGAGAAGCATGGGTGAAGTATCGCTCACTCATTAGATC 22541 Query 54484 GTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 54543 |||||||||||| |||| || || ||| ||||||||| | ||||| ||||| | Sbjct 22540 GTACGTCTCGATTGCTGCATCAATGTCCTCGCCATGAATTCCAATAGCGACTCGCATAAG 22481 Query 54544 CATGTGCTGAGGTCTTTCAACGATCT 54569 |||||||||||| | |||| ||| || Sbjct 22480 CATGTGCTGAGGACGTTCAGCGACCT 22455 Score = 82.4 bits (90), Expect = 9e-11 Identities = 184/274 (67%), Gaps = 2/274 (1%) Strand=Plus/Minus Query 54130 AATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCC 54189 ||| |||| |||||||||||||| ||| || | | |||| || || || || || || Sbjct 23002 AATGTCAGCATGCCACGGTTCCAGGTAGATTGCAAATGCTCCCGGTCGCTTATTACCGCC 22943 Query 54190 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 54249 || || | ||| | || ||||| || || || | | ||| ||||| | ||||| || Sbjct 22942 TTGGTCCACGTAACGTGCAGTGTTGTTGTATACACGAAGCATCGGAATCAAGCCATTAGA 22883 Query 54250 TGCACCA-TTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGAC 54308 || ||| ||| ||||| | | || |||| | || | ||||| | |||| Sbjct 22882 TGTGCCATTTGTTCCCGCAATCAGAG-ATCCAGTTGCTCTGATATTGTGCACGTTCAGAC 22824 Query 54309 CTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 54368 |||| || || || | |||||||| | ||| ||| | || || || || |||||||| Sbjct 22823 CTATTCCACCGGCACTCTTAGAGATCAGTGCACATTGCTTCAAAGTGTCGTAGATGCCAG 22764 Query 54369 CTATACTATCATCCATCATGTTAAGTAGAAAACA 54402 | || ||| || |||| | || || ||||| Sbjct 22763 CAATGGAATCCTCGCTCATTGTCAGAAGGAAACA 22730 >seq7663 Length=436145 Score = 82.4 bits (90), Expect = 9e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454 |||| | | ||| || ||||| | |||||||||||| || ||||| ||||| ||||| Sbjct 297825 ATCTCTGATATAGGTCTCAATAAGCTTACTATACATTTCAGAGTGAATATTTTCGATGGC 297766 Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTC 24514 |||||||| ||||| || ||| |||||| | || || |||||| | | || ||||| Sbjct 297765 AATTTGAAAACCGTAAAAGAATCGAGCCTCAGGAACTTGAACTTCTTTGGAGAAGCGTTC 297706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593625751069200