Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27]
12,915 sequences; 319,757,902 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq899 93.3 5e-14
seq7663 82.4 9e-11
>seq899
Length=82215
Score = 93.3 bits (102), Expect = 5e-14
Identities = 108/146 (74%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 54424 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 54483
|||||||||||| || | || |||||||| || || || || ||| | |||||
Sbjct 22600 AGTTCCCGCATTGAAAAGCGTGGGAGAAGCATGGGTGAAGTATCGCTCACTCATTAGATC 22541
Query 54484 GTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 54543
|||||||||||| |||| || || ||| ||||||||| | ||||| ||||| |
Sbjct 22540 GTACGTCTCGATTGCTGCATCAATGTCCTCGCCATGAATTCCAATAGCGACTCGCATAAG 22481
Query 54544 CATGTGCTGAGGTCTTTCAACGATCT 54569
|||||||||||| | |||| ||| ||
Sbjct 22480 CATGTGCTGAGGACGTTCAGCGACCT 22455
Score = 82.4 bits (90), Expect = 9e-11
Identities = 184/274 (67%), Gaps = 2/274 (1%)
Strand=Plus/Minus
Query 54130 AATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCC 54189
||| |||| |||||||||||||| ||| || | | |||| || || || || || ||
Sbjct 23002 AATGTCAGCATGCCACGGTTCCAGGTAGATTGCAAATGCTCCCGGTCGCTTATTACCGCC 22943
Query 54190 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 54249
|| || | ||| | || ||||| || || || | | ||| ||||| | ||||| ||
Sbjct 22942 TTGGTCCACGTAACGTGCAGTGTTGTTGTATACACGAAGCATCGGAATCAAGCCATTAGA 22883
Query 54250 TGCACCA-TTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGAC 54308
|| ||| ||| ||||| | | || |||| | || | ||||| | ||||
Sbjct 22882 TGTGCCATTTGTTCCCGCAATCAGAG-ATCCAGTTGCTCTGATATTGTGCACGTTCAGAC 22824
Query 54309 CTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 54368
|||| || || || | |||||||| | ||| ||| | || || || || ||||||||
Sbjct 22823 CTATTCCACCGGCACTCTTAGAGATCAGTGCACATTGCTTCAAAGTGTCGTAGATGCCAG 22764
Query 54369 CTATACTATCATCCATCATGTTAAGTAGAAAACA 54402
| || ||| || |||| | || || |||||
Sbjct 22763 CAATGGAATCCTCGCTCATTGTCAGAAGGAAACA 22730
>seq7663
Length=436145
Score = 82.4 bits (90), Expect = 9e-11
Identities = 90/120 (75%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454
|||| | | ||| || ||||| | |||||||||||| || ||||| ||||| |||||
Sbjct 297825 ATCTCTGATATAGGTCTCAATAAGCTTACTATACATTTCAGAGTGAATATTTTCGATGGC 297766
Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTC 24514
|||||||| ||||| || ||| |||||| | || || |||||| | | || |||||
Sbjct 297765 AATTTGAAAACCGTAAAAGAATCGAGCCTCAGGAACTTGAACTTCTTTGGAGAAGCGTTC 297706
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593625751069200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |