Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq8832 96.9 4e-15 >seq8832 Length=33236 Score = 96.9 bits (106), Expect = 4e-15 Identities = 108/142 (76%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || ||||| ||||| ||||||||| |||| || || || | Sbjct 23723 AATGCAGATCTTCGTTAAGACCCTCACTGGCAAGACCATCACCCTCGAAGTTGAGGCTTC 23664 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 ||| | | | | |||| |||||| || |||| ||||||||||| || ||| | |||| Sbjct 23663 CGATACCATCGAGAACG-TCAAGGCCAAGATTCAGGACAAAGAGGGGATTCCCCCAGACC 23605 Query 40808 AGCAACGACTCATCTACGCGGG 40829 |||| ||| | |||| ||| || Sbjct 23604 AGCAGCGATTGATCTTCGCAGG 23583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515136024300400