Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27]
12,915 sequences; 319,757,902 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq8275 95.1 2e-14
>seq8275
Length=204344
Score = 95.1 bits (104), Expect = 2e-14
Identities = 116/157 (74%), Gaps = 1/157 (1%)
Strand=Plus/Plus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
|||||| || ||| | ||||| | ||||| || || || || | ||| |||| |||
Sbjct 60090 AATGCAGATCTTTGTGAAGACGTTGACAGGAAAGACGATTACATTGGAGGTTGAGGCATC 60149
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
||||||||| ||| | || || ||||||||||| ||||| || |||||||||||
Sbjct 60150 TGATACAATCGAAAATGTCAAGGCTAAGATTCAAGATAAGGAAGGAATTCCACCTGATCA 60209
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGAT 124694
|| ||||||| |||||||| || |||| |||||
Sbjct 60210 GCAGCGGCTTATCTTTGCAGGTGAA-TATTACAGGAT 60245
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 755334041072000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |