Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq8275 95.1 2e-14 >seq8275 Length=204344 Score = 95.1 bits (104), Expect = 2e-14 Identities = 116/157 (74%), Gaps = 1/157 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | ||||| | ||||| || || || || | ||| |||| ||| Sbjct 60090 AATGCAGATCTTTGTGAAGACGTTGACAGGAAAGACGATTACATTGGAGGTTGAGGCATC 60149 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| | || || ||||||||||| ||||| || ||||||||||| Sbjct 60150 TGATACAATCGAAAATGTCAAGGCTAAGATTCAAGATAAGGAAGGAATTCCACCTGATCA 60209 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGAT 124694 || ||||||| |||||||| || |||| ||||| Sbjct 60210 GCAGCGGCTTATCTTTGCAGGTGAA-TATTACAGGAT 60245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755334041072000