Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq8832 89.7 4e-13 seq8587 89.7 4e-13 >seq8832 Length=33236 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 118599 CCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGT 118658 || ||| |||| || || |||||||| || || || |||||||||||| ||| || | Sbjct 24478 CCTGCGAAGATCAGTCGTTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGAATCTTGGCT 24537 Query 118659 TTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAG 118717 ||||| | ||| | |||||| | ||| ||||| || | || | || || || ||||| Sbjct 24538 TTAACATTTTCAATGGTGTCAGAAGCT-TCGACTTCAAGTGTAATAGTCTTTCCTGTCAG 24596 Query 118718 AGTTTTTACAAAAATCTGCAT 118738 |||||| || ||||||||||| Sbjct 24597 AGTTTTGACGAAAATCTGCAT 24617 >seq8587 Length=192155 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 118599 CCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGT 118658 || ||| |||| || ||||||||||| || || || |||||||||||| ||| || | Sbjct 141777 CCTGCGAAGATCAGTCGCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGAATCTTGGCT 141836 Query 118659 TTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAG 118717 ||||| | ||| | ||||| | ||| ||||| || | || | || || || ||||| Sbjct 141837 TTAACATTTTCAATAGTGTCAGAAGCT-TCGACTTCAAGCGTAATAGTCTTTCCTGTCAG 141895 Query 118718 AGTTTTTACAAAAATCTGCAT 118738 |||||| || ||||||||||| Sbjct 141896 AGTTTTGACGAAAATCTGCAT 141916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433762114417180