Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27]
12,915 sequences; 319,757,902 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq8832 89.7 4e-13
seq8587 89.7 4e-13
>seq8832
Length=33236
Score = 89.7 bits (98), Expect = 4e-13
Identities = 106/141 (75%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 118599 CCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGT 118658
|| ||| |||| || || |||||||| || || || |||||||||||| ||| || |
Sbjct 24478 CCTGCGAAGATCAGTCGTTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGAATCTTGGCT 24537
Query 118659 TTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAG 118717
||||| | ||| | |||||| | ||| ||||| || | || | || || || |||||
Sbjct 24538 TTAACATTTTCAATGGTGTCAGAAGCT-TCGACTTCAAGTGTAATAGTCTTTCCTGTCAG 24596
Query 118718 AGTTTTTACAAAAATCTGCAT 118738
|||||| || |||||||||||
Sbjct 24597 AGTTTTGACGAAAATCTGCAT 24617
>seq8587
Length=192155
Score = 89.7 bits (98), Expect = 4e-13
Identities = 106/141 (75%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 118599 CCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGT 118658
|| ||| |||| || ||||||||||| || || || |||||||||||| ||| || |
Sbjct 141777 CCTGCGAAGATCAGTCGCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGAATCTTGGCT 141836
Query 118659 TTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAG 118717
||||| | ||| | ||||| | ||| ||||| || | || | || || || |||||
Sbjct 141837 TTAACATTTTCAATAGTGTCAGAAGCT-TCGACTTCAAGCGTAATAGTCTTTCCTGTCAG 141895
Query 118718 AGTTTTTACAAAAATCTGCAT 118738
|||||| || |||||||||||
Sbjct 141896 AGTTTTGACGAAAATCTGCAT 141916
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433762114417180
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |