Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq9439 95.1 1e-14 seq7847 95.1 1e-14 seq9958 91.5 2e-13 seq8027 91.5 2e-13 seq2396 89.7 6e-13 seq2351 87.8 2e-12 seq12912 86.0 7e-12 seq10222 86.0 7e-12 seq8537 86.0 7e-12 seq8786 84.2 3e-11 seq10502 82.4 9e-11 seq8177 82.4 9e-11 >seq9439 Length=24278 Score = 95.1 bits (104), Expect = 1e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| |||| |||||| |||||| |||||| | ||||||||||| ||||||||||| Sbjct 18888 TTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCAC 18829 Query 60124 TATACTACCGAGGATTG 60140 |||||||||||||| || Sbjct 18828 TATACTACCGAGGACTG 18812 >seq7847 Length=211577 Score = 95.1 bits (104), Expect = 1e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| |||| |||||| |||||| |||||| | ||||||||||| ||||||||||| Sbjct 39764 TTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCAC 39705 Query 60124 TATACTACCGAGGATTG 60140 |||||||||||||| || Sbjct 39704 TATACTACCGAGGACTG 39688 >seq9958 Length=152026 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 |||| ||| |||||| |||| |||||| |||||| |||||| | ||||||| || | Sbjct 84813 ATGACAAAAATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGA 84872 Query 60114 TACTCACCACTATACTACCGAGGAT 60138 ||||||||||||||||||||||||| Sbjct 84873 TACTCACCACTATACTACCGAGGAT 84897 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 |||| ||| |||||| |||| |||||| |||||| |||||| | ||||||| || | Sbjct 84979 ATGACAAAAATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGA 85038 Query 60114 TACTCACCACTATACTACCGAGGAT 60138 ||||||||||||||||||||||||| Sbjct 85039 TACTCACCACTATACTACCGAGGAT 85063 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/82 (84%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||||| |||| |||| |||||| |||||| |||||| | ||||||| || |||| Sbjct 84649 AAAAATT--CTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 84706 Query 60117 TCACCACTATACTACCGAGGAT 60138 |||||||||||||||||||||| Sbjct 84707 TCACCACTATACTACCGAGGAT 84728 >seq8027 Length=47034 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 |||| ||| |||||| |||| |||||| |||||| |||||| | ||||||| || | Sbjct 6340 ATGACAAAAATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGA 6281 Query 60114 TACTCACCACTATACTACCGAGGAT 60138 ||||||||||||||||||||||||| Sbjct 6280 TACTCACCACTATACTACCGAGGAT 6256 >seq2396 Length=1105 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 ||||||| | ||||||||||||| || || || ||||||||||||| ||||| ||||||| Sbjct 1034 CTCCTCGACCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACTTACCACTA 1093 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 1094 TACTATCGAGGA 1105 >seq2351 Length=257688 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| |||||| |||| |||||| |||||| |||||| | ||||||| || ||||| Sbjct 68121 AAAAACTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACT 68180 Query 60118 CACCACTATACTACCGAGGAT 60138 ||||||||||||||||||||| Sbjct 68181 CACCACTATACTACCGAGGAT 68201 >seq12912 Length=92045 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| |||| |||||| |||||| |||||| | ||||||| || ||||||||||| Sbjct 62685 TTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACTCACCAC 62744 Query 60124 TATACTACCGAGGAT 60138 ||||||||||||||| Sbjct 62745 TATACTACCGAGGAT 62759 >seq10222 Length=15788 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| |||| |||||| |||||| |||||| | ||||||| || ||||||||||| Sbjct 11718 TTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACTCACCAC 11659 Query 60124 TATACTACCGAGGAT 60138 ||||||||||||||| Sbjct 11658 TATACTACCGAGGAT 11644 >seq8537 Length=38487 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| |||||| |||| |||||| |||||| |||||| | ||||||| || ||||| Sbjct 32889 AAAAACTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACT 32830 Query 60118 CACCACTATACTACCGAGGA 60137 |||||||||||||||||||| Sbjct 32829 CACCACTATACTACCGAGGA 32810 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| |||| |||||| |||||| |||||| | ||||||| || ||||||||||| Sbjct 33792 TTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACTCACCAC 33733 Query 60124 TATACTACCGAGGA 60137 |||||||||||||| Sbjct 33732 TATACTACCGAGGA 33719 >seq8786 Length=185148 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| |||| |||||| |||||| |||||| | ||||||| || ||||||||||| Sbjct 5 TTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACTCACCAC 64 Query 60124 TATACTACCGAGGA 60137 |||||||||||||| Sbjct 65 TATACTACCGAGGA 78 >seq10502 Length=334720 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| |||| |||||| |||||| ||||| | ||||||| || ||||||||||| Sbjct 304901 TTCTCCCCGGCCGGGAATTGAACCCGTGTCTCGCATGTGACAGACGCGGATACTCACCAC 304842 Query 60124 TATACTACCGAGGAT 60138 ||||||||||||||| Sbjct 304841 TATACTACCGAGGAT 304827 >seq8177 Length=207139 Score = 82.4 bits (90), Expect = 9e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| |||| |||||| |||||| |||||| | ||||||| || ||||||||||| Sbjct 147663 TTCTCC-CGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACTCACCAC 147721 Query 60124 TATACTACCGAGGAT 60138 ||||||||||||||| Sbjct 147722 TATACTACCGAGGAT 147736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571725287196200