Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq899 131 1e-25 seq7056 122 8e-23 seq8716 89.7 5e-13 seq8832 86.0 6e-12 seq8131 82.4 7e-11 >seq899 Length=82215 Score = 131 bits (144), Expect = 1e-25 Identities = 174/242 (72%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 23441 TCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTG 23500 || || | ||| ||||||||||| || ||||| | ||||| || ||||||| |||||| Sbjct 23007 TCGAAAATGTCAGCATGCCACGGTTCCAGGTAGATTGCAAATGCTCCCGGTCGCTTATTA 22948 Query 23501 CCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCG 23560 ||||| || || |||||||| || ||||||||||| || | |||||||| | | || Sbjct 22947 CCGCCTTGGTCCACGTAACGTGCAGTGTTGTTGTATACACGAAGCATCGGAATCAAGCCA 22888 Query 23561 TTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGG 23620 || || | ||| | ||||| | || || |||||| | ||||| |||| Sbjct 22887 TTAGATGTGCCATTTGTTCCCGCAATCAGAGATCCAGTTGCTCTGATATTGTGCACGTTC 22828 Query 23621 AAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATG 23680 | |||||| || ||| | || || |||| || ||||| |||| ||||||||||||| Sbjct 22827 AGACCTATTCCACCGGCACTCTTAGAGATCAGTGCACATTGCTTCAAAGTGTCGTAGATG 22768 Query 23681 CC 23682 || Sbjct 22767 CC 22766 >seq7056 Length=51435 Score = 122 bits (134), Expect = 8e-23 Identities = 201/290 (69%), Gaps = 0/290 (0%) Strand=Plus/Plus Query 23441 TCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTG 23500 || || | ||| |||||||| || || ||||| | || || || ||||||| |||||| Sbjct 22464 TCGAAAATGTCAGCATGCCATGGTTCCAGGTAGATTGCGAATGCTCCCGGTCGCTTATTA 22523 Query 23501 CCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCG 23560 ||||| || || || ||||| || ||||||||||| |||| |||||||| | | || Sbjct 22524 CCGCCTTGGTCCACATAACGTGCAGTGTTGTTGTATACTCGAAGCATCGGAATCAAGCCA 22583 Query 23561 TTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGG 23620 ||||| | ||| | ||||| | ||| || | |||| | ||||| |||| Sbjct 22584 TTGGATGTGCCATTTGTTCCCGCAATCAGCGATCCAGTAGCTCTGATATTGTGCACGTTC 22643 Query 23621 AAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATG 23680 | |||||| || ||| | || || |||| || ||||| |||| ||||||||| ||| Sbjct 22644 AGACCTATTCCACCGGCACTCTTGGAGATCAGGGCACATTGCTTCAAAGTGTCGTAAATG 22703 Query 23681 CCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTG 23730 || | || ||||| | | | | | |||||| ||||||| ||| Sbjct 22704 CCAGCAATCGAATCCTCGCTCATTGTTAGGAGGAAACAAGAAGACAGTTG 22753 >seq8716 Length=186993 Score = 89.7 bits (98), Expect = 5e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| |||||||||||||| || || ||||| |||||| | || ||||| | ||| Sbjct 74655 ATGCAAATCTTCGTAAAGACTCTTACGGGAAAAACTATCACCCTGGAGGTTGAGGCCTCC 74596 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | || || | || ||| |||||||| | ||||| || ||| Sbjct 74595 GATACCATCGAGAATGTGAAGGCCAAGATTCAGGATAAGGAAGGAATCCCGCCTGATCAG 74536 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344 ||||| || || ||||| || |||| ||||| Sbjct 74535 CAGCGACTTATCTTCGCAGGTAAACTTTTGGA 74504 >seq8832 Length=33236 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| |||||||| || || || |||||||| |||| |||||| | ||| Sbjct 23426 ATGCAAATCTTCGTCAAGACTCTTACTGGAAAGACGATCACTCTCGAAGTTGAAGCATCC 23367 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||||| || || | ||| ||| |||||||| | || || |||||| Sbjct 23366 GATACCATCGAAAATGTAAAGGCCAAAATTCAGGATAAGGAAGGAATTCCACCAGACCAG 23307 Query 31313 CAGCGTCTAATATTCGCTGG 31332 ||||| | || || ||||| Sbjct 23306 CAGCGATTGATCTTTGCTGG 23287 >seq8131 Length=46037 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| |||||||||||||| || || ||||| |||||| |||| ||||| | || Sbjct 31726 ATGCAAATCTTCGTAAAGACTCTTACGGGAAAAACCATCACCCTCGAGGTTGAGGCCTCT 31667 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | || || | || ||| |||||||| | ||||| || ||| Sbjct 31666 GATACCATCGAGAATGTGAAGGCCAAGATTCAGGATAAGGAAGGAATTCCGCCTGATCAG 31607 Query 31313 CAGCGTCTAATATTCGCTGG 31332 ||||| || || ||||| || Sbjct 31606 CAGCGACTTATCTTCGCAGG 31587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445694436586800