Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27]
12,915 sequences; 319,757,902 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq899 131 1e-25
seq7056 122 8e-23
seq8716 89.7 5e-13
seq8832 86.0 6e-12
seq8131 82.4 7e-11
>seq899
Length=82215
Score = 131 bits (144), Expect = 1e-25
Identities = 174/242 (72%), Gaps = 0/242 (0%)
Strand=Plus/Minus
Query 23441 TCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTG 23500
|| || | ||| ||||||||||| || ||||| | ||||| || ||||||| ||||||
Sbjct 23007 TCGAAAATGTCAGCATGCCACGGTTCCAGGTAGATTGCAAATGCTCCCGGTCGCTTATTA 22948
Query 23501 CCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCG 23560
||||| || || |||||||| || ||||||||||| || | |||||||| | | ||
Sbjct 22947 CCGCCTTGGTCCACGTAACGTGCAGTGTTGTTGTATACACGAAGCATCGGAATCAAGCCA 22888
Query 23561 TTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGG 23620
|| || | ||| | ||||| | || || |||||| | ||||| ||||
Sbjct 22887 TTAGATGTGCCATTTGTTCCCGCAATCAGAGATCCAGTTGCTCTGATATTGTGCACGTTC 22828
Query 23621 AAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATG 23680
| |||||| || ||| | || || |||| || ||||| |||| |||||||||||||
Sbjct 22827 AGACCTATTCCACCGGCACTCTTAGAGATCAGTGCACATTGCTTCAAAGTGTCGTAGATG 22768
Query 23681 CC 23682
||
Sbjct 22767 CC 22766
>seq7056
Length=51435
Score = 122 bits (134), Expect = 8e-23
Identities = 201/290 (69%), Gaps = 0/290 (0%)
Strand=Plus/Plus
Query 23441 TCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTG 23500
|| || | ||| |||||||| || || ||||| | || || || ||||||| ||||||
Sbjct 22464 TCGAAAATGTCAGCATGCCATGGTTCCAGGTAGATTGCGAATGCTCCCGGTCGCTTATTA 22523
Query 23501 CCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCG 23560
||||| || || || ||||| || ||||||||||| |||| |||||||| | | ||
Sbjct 22524 CCGCCTTGGTCCACATAACGTGCAGTGTTGTTGTATACTCGAAGCATCGGAATCAAGCCA 22583
Query 23561 TTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGG 23620
||||| | ||| | ||||| | ||| || | |||| | ||||| ||||
Sbjct 22584 TTGGATGTGCCATTTGTTCCCGCAATCAGCGATCCAGTAGCTCTGATATTGTGCACGTTC 22643
Query 23621 AAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATG 23680
| |||||| || ||| | || || |||| || ||||| |||| ||||||||| |||
Sbjct 22644 AGACCTATTCCACCGGCACTCTTGGAGATCAGGGCACATTGCTTCAAAGTGTCGTAAATG 22703
Query 23681 CCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTG 23730
|| | || ||||| | | | | | |||||| ||||||| |||
Sbjct 22704 CCAGCAATCGAATCCTCGCTCATTGTTAGGAGGAAACAAGAAGACAGTTG 22753
>seq8716
Length=186993
Score = 89.7 bits (98), Expect = 5e-13
Identities = 111/152 (73%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| |||||||||||||| || || ||||| |||||| | || ||||| | |||
Sbjct 74655 ATGCAAATCTTCGTAAAGACTCTTACGGGAAAAACTATCACCCTGGAGGTTGAGGCCTCC 74596
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | |||| | || || | || ||| |||||||| | ||||| || |||
Sbjct 74595 GATACCATCGAGAATGTGAAGGCCAAGATTCAGGATAAGGAAGGAATCCCGCCTGATCAG 74536
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344
||||| || || ||||| || |||| |||||
Sbjct 74535 CAGCGACTTATCTTCGCAGGTAAACTTTTGGA 74504
>seq8832
Length=33236
Score = 86.0 bits (94), Expect = 6e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| ||||| |||||||| || || || |||||||| |||| |||||| | |||
Sbjct 23426 ATGCAAATCTTCGTCAAGACTCTTACTGGAAAGACGATCACTCTCGAAGTTGAAGCATCC 23367
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | |||||| || || | ||| ||| |||||||| | || || ||||||
Sbjct 23366 GATACCATCGAAAATGTAAAGGCCAAAATTCAGGATAAGGAAGGAATTCCACCAGACCAG 23307
Query 31313 CAGCGTCTAATATTCGCTGG 31332
||||| | || || |||||
Sbjct 23306 CAGCGATTGATCTTTGCTGG 23287
>seq8131
Length=46037
Score = 82.4 bits (90), Expect = 7e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| |||||||||||||| || || ||||| |||||| |||| ||||| | ||
Sbjct 31726 ATGCAAATCTTCGTAAAGACTCTTACGGGAAAAACCATCACCCTCGAGGTTGAGGCCTCT 31667
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | |||| | || || | || ||| |||||||| | ||||| || |||
Sbjct 31666 GATACCATCGAGAATGTGAAGGCCAAGATTCAGGATAAGGAAGGAATTCCGCCTGATCAG 31607
Query 31313 CAGCGTCTAATATTCGCTGG 31332
||||| || || ||||| ||
Sbjct 31606 CAGCGACTTATCTTCGCAGG 31587
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445694436586800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |