Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq899 100 4e-16 seq7663 87.8 2e-12 >seq899 Length=82215 Score = 100 bits (110), Expect = 4e-16 Identities = 188/274 (69%), Gaps = 2/274 (1%) Strand=Plus/Minus Query 63368 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63427 ||| |||| |||||||||||||| ||| || || | |||| || || || || || || Sbjct 23002 AATGTCAGCATGCCACGGTTCCAGGTAGATTGCAAATGCTCCCGGTCGCTTATTACCGCC 22943 Query 63428 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63487 || || | ||| | || ||||| || || || | | ||| ||||| | || || || Sbjct 22942 TTGGTCCACGTAACGTGCAGTGTTGTTGTATACACGAAGCATCGGAATCAAGCCATTAGA 22883 Query 63488 TATACCATTGGTACCGGAGAT-ATAGCCTCCACTGGCACGAATATTACTAATTGATAGAC 63546 | | ||||| || || | || | || |||| | || | ||||| | |||| Sbjct 22882 TGTGCCATTTGTTCCCGCAATCAGAGA-TCCAGTTGCTCTGATATTGTGCACGTTCAGAC 22824 Query 63547 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTT 63606 ||||||| || || | |||||||| | ||| ||| | || || ||||| |||||||| Sbjct 22823 CTATTCCACCGGCACTCTTAGAGATCAGTGCACATTGCTTCAAAGTGTCGTAGATGCCAG 22764 Query 63607 CTATGCTATCATCGATCATGTTAAGTAGAAAACA 63640 | ||| ||| ||| |||| | || || ||||| Sbjct 22763 CAATGGAATCCTCGCTCATTGTCAGAAGGAAACA 22730 Score = 84.2 bits (92), Expect = 3e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 64023 GTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGT 64082 |||| ||| || | ||| || | ||| ||||| ||||| ||||||||||| || ||||| Sbjct 22004 GTTTTCTTATGCAAATTGGAAACGGCGATTCTAGCGGCAAGAATGGCATAGTCAGGATGC 21945 Query 64083 TGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACT 64142 || || || | || || |||| || || | |||||| ||| || || | |||| Sbjct 21944 TGAGTGGTCATCGAAGCCGCAGTTTCAGCAGCTAAGTTGTCCAGTTCCACTGTAGATACT 21885 Query 64143 CCATTATATATTCCTTGAATAACCTTCATAGCTA 64176 || || || | ||| |||||||||||| |||| Sbjct 21884 CCTTTGTAGAGTCCAGCAATAACCTTCATCGCTA 21851 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 |||||||||||| || | || |||||||| || || || || ||| | ||||| Sbjct 22600 AGTTCCCGCATTGAAAAGCGTGGGAGAAGCATGGGTGAAGTATCGCTCACTCATTAGATC 22541 Query 63722 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63781 ||||||||| || |||| || || ||| ||||||||| | ||||| ||||| | Sbjct 22540 GTACGTCTCGATTGCTGCATCAATGTCCTCGCCATGAATTCCAATAGCGACTCGCATAAG 22481 Query 63782 CATGTGCTGAGGTCTTTCA 63800 |||||||||||| | |||| Sbjct 22480 CATGTGCTGAGGACGTTCA 22462 >seq7663 Length=436145 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 34080 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 34139 || |||||||||||||||||||| || | || ||||| || | ||| ||||||||| Sbjct 297442 ACCTCTTCCACTGTCCAAAATGACGCAACAGCTTTTTTGTAGAAGGCCCAAATGTCATGA 297383 Query 34140 TATTGGATTGGGAAAATAACAAATCTATTTGGATTT 34175 || | || |||||||| ||||||||||| |||||| Sbjct 297382 TACTTGAGGGGGAAAATGACAAATCTATTCGGATTT 297347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629715923821200