Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq899 95.1 2e-14 >seq899 Length=82215 Score = 95.1 bits (104), Expect = 2e-14 Identities = 187/274 (68%), Gaps = 2/274 (1%) Strand=Plus/Minus Query 66161 AATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 66220 ||| ||| |||||||||||||| ||| || || | |||| || || || || || || Sbjct 23002 AATGTCAGCATGCCACGGTTCCAGGTAGATTGCAAATGCTCCCGGTCGCTTATTACCGCC 22943 Query 66221 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 66280 || || | ||| | || ||||| || || || | | ||| ||||| | ||||| || Sbjct 22942 TTGGTCCACGTAACGTGCAGTGTTGTTGTATACACGAAGCATCGGAATCAAGCCATTAGA 22883 Query 66281 TGTACCA-TTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAGAC 66339 ||| ||| ||| ||||| | | || |||| |||| | ||||| | |||| Sbjct 22882 TGTGCCATTTGTTCCCGCAATCAGAG-ATCCAGTTGCTCTGATATTGTGCACGTTCAGAC 22824 Query 66340 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 66399 ||||||| || || | |||||||| | ||| ||| | || || || || |||||||| Sbjct 22823 CTATTCCACCGGCACTCTTAGAGATCAGTGCACATTGCTTCAAAGTGTCGTAGATGCCAG 22764 Query 66400 CTATACTATCATCCATCATGTTAAGTAGAAAACA 66433 | || ||| || |||| | || || ||||| Sbjct 22763 CAATGGAATCCTCGCTCATTGTCAGAAGGAAACA 22730 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 66455 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 66514 |||||||||||| || | || |||||||| || || || || ||| | ||||| Sbjct 22600 AGTTCCCGCATTGAAAAGCGTGGGAGAAGCATGGGTGAAGTATCGCTCACTCATTAGATC 22541 Query 66515 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 66574 ||||||||| || |||| || || ||| ||||||||| | ||||| ||||| | Sbjct 22540 GTACGTCTCGATTGCTGCATCAATGTCCTCGCCATGAATTCCAATAGCGACTCGCATAAG 22481 Query 66575 CATGTGCTGAGGTCTTTCAACGATCT 66600 |||||||||||| | |||| ||| || Sbjct 22480 CATGTGCTGAGGACGTTCAGCGACCT 22455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658066546228600