Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq899 109 8e-19 seq7056 95.1 2e-14 seq7663 89.7 7e-13 >seq899 Length=82215 Score = 109 bits (120), Expect = 8e-19 Identities = 190/274 (69%), Gaps = 2/274 (1%) Strand=Plus/Minus Query 80040 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCC 80099 ||| |||| |||||||||||||| ||| || || | |||||||||| || || || || Sbjct 23002 AATGTCAGCATGCCACGGTTCCAGGTAGATTGCAAATGCTCCCGGTCGCTTATTACCGCC 22943 Query 80100 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 80159 || || | ||| | || ||||| || || || | | ||| ||||| | ||||| || Sbjct 22942 TTGGTCCACGTAACGTGCAGTGTTGTTGTATACACGAAGCATCGGAATCAAGCCATTAGA 22883 Query 80160 TGTACCA-TTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGAC 80218 ||| ||| ||| ||||| | | || |||| | || | ||||| | |||| Sbjct 22882 TGTGCCATTTGTTCCCGCAATCAGAG-ATCCAGTTGCTCTGATATTGTGCACGTTCAGAC 22824 Query 80219 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 80278 ||||||| || || | |||||||| | ||| ||| | || || || || |||||||| Sbjct 22823 CTATTCCACCGGCACTCTTAGAGATCAGTGCACATTGCTTCAAAGTGTCGTAGATGCCAG 22764 Query 80279 CTATGCTATCATCAATCATGTTAAGTAGAAAACA 80312 | ||| ||| || |||| | || || ||||| Sbjct 22763 CAATGGAATCCTCGCTCATTGTCAGAAGGAAACA 22730 Score = 93.3 bits (102), Expect = 6e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 |||||||||||| || | || |||||||| || || || || ||| || ||||| Sbjct 22600 AGTTCCCGCATTGAAAAGCGTGGGAGAAGCATGGGTGAAGTATCGCTCACTCATTAGATC 22541 Query 80394 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAA 80453 ||||||||| || |||| || || ||| ||||||||| | ||||| ||||| | Sbjct 22540 GTACGTCTCGATTGCTGCATCAATGTCCTCGCCATGAATTCCAATAGCGACTCGCATAAG 22481 Query 80454 CATGTGCTGAGGTCTTTCAACGATCT 80479 |||||||||||| | |||| ||| || Sbjct 22480 CATGTGCTGAGGACGTTCAGCGACCT 22455 Score = 89.7 bits (98), Expect = 7e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 79047 ATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGT 79106 ||| ||||| || | ||| || || ||||| | ||||| ||| |||| ||||| ||| Sbjct 24567 ATGAGGATTGACAATTTGGAAATCACCAGAAAGAACTCTTCGACTGTAGATATTTGAGGT 24508 Query 79107 ATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGG 79166 || || || | || || || || || | ||| ||||| ||||| |||||||||||||| Sbjct 24507 GTACGGCTCAATGGACTCGTTGTTGCCAAGAATCTGAGCTGTTGACGCCGTTGGCATAGG 24448 Query 79167 TGCCACCAATAAACTATTTCTAAGACC 79193 || | ||| ||||| || | || ||| Sbjct 24447 GGCAAGCAACAAACTGTTGCGAACACC 24421 >seq7056 Length=51435 Score = 95.1 bits (104), Expect = 2e-14 Identities = 194/286 (68%), Gaps = 2/286 (1%) Strand=Plus/Plus Query 80040 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCC 80099 ||| |||| |||||| ||||||| ||| || || | |||||||||| || || || || Sbjct 22469 AATGTCAGCATGCCATGGTTCCAGGTAGATTGCGAATGCTCCCGGTCGCTTATTACCGCC 22528 Query 80100 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 80159 || || | || | || ||||| || || |||| | ||| ||||| | |||||||| Sbjct 22529 TTGGTCCACATAACGTGCAGTGTTGTTGTATACTCGAAGCATCGGAATCAAGCCATTGGA 22588 Query 80160 TGTACCATTGGTCCCGGAGATATAGC-TTCCACTGGCACGAATATTACTAATTGATAGAC 80218 ||| ||||| || || | || ||| |||| | || | ||||| | |||| Sbjct 22589 TGTGCCATTTGTTCCCGCAAT-CAGCGATCCAGTAGCTCTGATATTGTGCACGTTCAGAC 22647 Query 80219 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 80278 ||||||| || || | || ||||| | || ||| | || || || || || ||||| Sbjct 22648 CTATTCCACCGGCACTCTTGGAGATCAGGGCACATTGCTTCAAAGTGTCGTAAATGCCAG 22707 Query 80279 CTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTG 80324 | || ||| || |||| | || || ||||| ||||| ||| Sbjct 22708 CAATCGAATCCTCGCTCATTGTTAGGAGGAAACAAGAAGACAGTTG 22753 >seq7663 Length=436145 Score = 89.7 bits (98), Expect = 7e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 50457 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 50516 ||| |||||||||||||||||||| || | || ||||| || | ||| |||||||| Sbjct 297443 TACCTCTTCCACTGTCCAAAATGACGCAACAGCTTTTTTGTAGAAGGCCCAAATGTCATG 297384 Query 50517 ATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 50553 ||| | || |||||||| ||||||||||| |||||| Sbjct 297383 ATACTTGAGGGGGAAAATGACAAATCTATTCGGATTT 297347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718152844480600