Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27]
12,915 sequences; 319,757,902 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq899 109 8e-19
seq7056 95.1 2e-14
seq7663 89.7 7e-13
>seq899
Length=82215
Score = 109 bits (120), Expect = 8e-19
Identities = 190/274 (69%), Gaps = 2/274 (1%)
Strand=Plus/Minus
Query 80040 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCC 80099
||| |||| |||||||||||||| ||| || || | |||||||||| || || || ||
Sbjct 23002 AATGTCAGCATGCCACGGTTCCAGGTAGATTGCAAATGCTCCCGGTCGCTTATTACCGCC 22943
Query 80100 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 80159
|| || | ||| | || ||||| || || || | | ||| ||||| | ||||| ||
Sbjct 22942 TTGGTCCACGTAACGTGCAGTGTTGTTGTATACACGAAGCATCGGAATCAAGCCATTAGA 22883
Query 80160 TGTACCA-TTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGAC 80218
||| ||| ||| ||||| | | || |||| | || | ||||| | ||||
Sbjct 22882 TGTGCCATTTGTTCCCGCAATCAGAG-ATCCAGTTGCTCTGATATTGTGCACGTTCAGAC 22824
Query 80219 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 80278
||||||| || || | |||||||| | ||| ||| | || || || || ||||||||
Sbjct 22823 CTATTCCACCGGCACTCTTAGAGATCAGTGCACATTGCTTCAAAGTGTCGTAGATGCCAG 22764
Query 80279 CTATGCTATCATCAATCATGTTAAGTAGAAAACA 80312
| ||| ||| || |||| | || || |||||
Sbjct 22763 CAATGGAATCCTCGCTCATTGTCAGAAGGAAACA 22730
Score = 93.3 bits (102), Expect = 6e-14
Identities = 108/146 (74%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393
|||||||||||| || | || |||||||| || || || || ||| || |||||
Sbjct 22600 AGTTCCCGCATTGAAAAGCGTGGGAGAAGCATGGGTGAAGTATCGCTCACTCATTAGATC 22541
Query 80394 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAA 80453
||||||||| || |||| || || ||| ||||||||| | ||||| ||||| |
Sbjct 22540 GTACGTCTCGATTGCTGCATCAATGTCCTCGCCATGAATTCCAATAGCGACTCGCATAAG 22481
Query 80454 CATGTGCTGAGGTCTTTCAACGATCT 80479
|||||||||||| | |||| ||| ||
Sbjct 22480 CATGTGCTGAGGACGTTCAGCGACCT 22455
Score = 89.7 bits (98), Expect = 7e-13
Identities = 108/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 79047 ATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGT 79106
||| ||||| || | ||| || || ||||| | ||||| ||| |||| ||||| |||
Sbjct 24567 ATGAGGATTGACAATTTGGAAATCACCAGAAAGAACTCTTCGACTGTAGATATTTGAGGT 24508
Query 79107 ATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGG 79166
|| || || | || || || || || | ||| ||||| ||||| ||||||||||||||
Sbjct 24507 GTACGGCTCAATGGACTCGTTGTTGCCAAGAATCTGAGCTGTTGACGCCGTTGGCATAGG 24448
Query 79167 TGCCACCAATAAACTATTTCTAAGACC 79193
|| | ||| ||||| || | || |||
Sbjct 24447 GGCAAGCAACAAACTGTTGCGAACACC 24421
>seq7056
Length=51435
Score = 95.1 bits (104), Expect = 2e-14
Identities = 194/286 (68%), Gaps = 2/286 (1%)
Strand=Plus/Plus
Query 80040 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCC 80099
||| |||| |||||| ||||||| ||| || || | |||||||||| || || || ||
Sbjct 22469 AATGTCAGCATGCCATGGTTCCAGGTAGATTGCGAATGCTCCCGGTCGCTTATTACCGCC 22528
Query 80100 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 80159
|| || | || | || ||||| || || |||| | ||| ||||| | ||||||||
Sbjct 22529 TTGGTCCACATAACGTGCAGTGTTGTTGTATACTCGAAGCATCGGAATCAAGCCATTGGA 22588
Query 80160 TGTACCATTGGTCCCGGAGATATAGC-TTCCACTGGCACGAATATTACTAATTGATAGAC 80218
||| ||||| || || | || ||| |||| | || | ||||| | ||||
Sbjct 22589 TGTGCCATTTGTTCCCGCAAT-CAGCGATCCAGTAGCTCTGATATTGTGCACGTTCAGAC 22647
Query 80219 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 80278
||||||| || || | || ||||| | || ||| | || || || || || |||||
Sbjct 22648 CTATTCCACCGGCACTCTTGGAGATCAGGGCACATTGCTTCAAAGTGTCGTAAATGCCAG 22707
Query 80279 CTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTG 80324
| || ||| || |||| | || || ||||| ||||| |||
Sbjct 22708 CAATCGAATCCTCGCTCATTGTTAGGAGGAAACAAGAAGACAGTTG 22753
>seq7663
Length=436145
Score = 89.7 bits (98), Expect = 7e-13
Identities = 78/97 (80%), Gaps = 0/97 (0%)
Strand=Plus/Minus
Query 50457 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 50516
||| |||||||||||||||||||| || | || ||||| || | ||| ||||||||
Sbjct 297443 TACCTCTTCCACTGTCCAAAATGACGCAACAGCTTTTTTGTAGAAGGCCCAAATGTCATG 297384
Query 50517 ATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 50553
||| | || |||||||| ||||||||||| ||||||
Sbjct 297383 ATACTTGAGGGGGAAAATGACAAATCTATTCGGATTT 297347
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718152844480600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |