Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27]
12,915 sequences; 319,757,902 total letters
Query= NC_004062.1
Length=119217
Score E
Sequences producing significant alignments: (Bits) Value
seq8275 86.0 5e-12
>seq8275
Length=204344
Score = 86.0 bits (94), Expect = 5e-12
Identities = 105/141 (74%), Gaps = 2/141 (1%)
Strand=Plus/Minus
Query 42970 CCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGA-TCAACTC 43028
|||||||| || | ||||| ||||| | ||| | |||||||| || |||| || |
Sbjct 60880 CCGGCAAAGATGAGCCGCTGCTGATCTGGCGGGATTCCTTCTTTGTC-CTGAATCTTGGC 60822
Query 43029 TTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAG 43088
|||||| | ||| |||||| ||| || || || | || ||||||||||| || ||
Sbjct 60821 TTTGACGTTTTCAATTGTGTCCGAAGCTTCCACTTCCAATGTAATAGTTTTTCCAGTCAG 60762
Query 43089 AGTTTTCACAAAAATTTGCAT 43109
||||||||| || ||||||||
Sbjct 60761 AGTTTTCACGAAGATTTGCAT 60741
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 381309571829070
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |