Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq899 100 4e-16 seq7056 89.7 7e-13 >seq899 Length=82215 Score = 100 bits (110), Expect = 4e-16 Identities = 188/274 (69%), Gaps = 2/274 (1%) Strand=Plus/Minus Query 72123 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCC 72182 ||| |||| |||||||||||||| ||| || || | ||||||| || || || || || Sbjct 23002 AATGTCAGCATGCCACGGTTCCAGGTAGATTGCAAATGCTCCCGGTCGCTTATTACCGCC 22943 Query 72183 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 72242 || || | ||| | || ||||| || || || | | ||| ||||| | ||||| || Sbjct 22942 TTGGTCCACGTAACGTGCAGTGTTGTTGTATACACGAAGCATCGGAATCAAGCCATTAGA 22883 Query 72243 TGCACCA-TTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGAC 72301 || ||| ||| ||||| | | || |||| | || | |||||| | |||| Sbjct 22882 TGTGCCATTTGTTCCCGCAATCAGAG-ATCCAGTTGCTCTGATATTGTGCACGTTCAGAC 22824 Query 72302 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 72361 ||||||| || || | |||||||| | ||| ||| | || || || || |||||||| Sbjct 22823 CTATTCCACCGGCACTCTTAGAGATCAGTGCACATTGCTTCAAAGTGTCGTAGATGCCAG 22764 Query 72362 CTATACTATCATCCATCATGTTAAGTAGAAAACA 72395 | || ||| || |||| | || || ||||| Sbjct 22763 CAATGGAATCCTCGCTCATTGTCAGAAGGAAACA 22730 Score = 84.2 bits (92), Expect = 3e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 72778 GTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATGT 72837 |||| ||| || | ||| || ||||| ||||| ||||| ||||||||||| || ||||| Sbjct 22004 GTTTTCTTATGCAAATTGGAAACGGCGATTCTAGCGGCAAGAATGGCATAGTCAGGATGC 21945 Query 72838 TGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTTGTTACT 72897 || || || | || || |||| || || | |||||| ||| || || | |||| Sbjct 21944 TGAGTGGTCATCGAAGCCGCAGTTTCAGCAGCTAAGTTGTCCAGTTCCACTGTAGATACT 21885 Query 72898 CCATTATATATTCCTTGGATAACCTTCATAGCTA 72931 || || || | ||| ||||||||||| |||| Sbjct 21884 CCTTTGTAGAGTCCAGCAATAACCTTCATCGCTA 21851 Score = 84.2 bits (92), Expect = 3e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 |||||||||||| || | || |||||||| || || || || ||| || ||||| Sbjct 22600 AGTTCCCGCATTGAAAAGCGTGGGAGAAGCATGGGTGAAGTATCGCTCACTCATTAGATC 22541 Query 72477 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAA 72536 ||||||||| || |||| || || ||| ||| ||||| | ||||| ||||| | Sbjct 22540 GTACGTCTCGATTGCTGCATCAATGTCCTCGCCATGAATTCCAATAGCGACTCGCATAAG 22481 Query 72537 CATATGCTGAGGTCTTTCAACGATCT 72562 ||| |||||||| | |||| ||| || Sbjct 22480 CATGTGCTGAGGACGTTCAGCGACCT 22455 >seq7056 Length=51435 Score = 89.7 bits (98), Expect = 7e-13 Identities = 193/286 (67%), Gaps = 2/286 (1%) Strand=Plus/Plus Query 72123 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCC 72182 ||| |||| |||||| ||||||| ||| || || | ||||||| || || || || || Sbjct 22469 AATGTCAGCATGCCATGGTTCCAGGTAGATTGCGAATGCTCCCGGTCGCTTATTACCGCC 22528 Query 72183 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 72242 || || | || | || ||||| || || |||| | ||| ||||| | |||||||| Sbjct 22529 TTGGTCCACATAACGTGCAGTGTTGTTGTATACTCGAAGCATCGGAATCAAGCCATTGGA 22588 Query 72243 TGCACCATTGGTCCCGGAGATATAGCT-TCCACTGGCACGAATATTGCTAATTGATAGAC 72301 || ||||| || || | || ||| |||| | || | |||||| | |||| Sbjct 22589 TGTGCCATTTGTTCCCGCAATC-AGCGATCCAGTAGCTCTGATATTGTGCACGTTCAGAC 22647 Query 72302 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 72361 ||||||| || || | || ||||| | || ||| | || || || || || ||||| Sbjct 22648 CTATTCCACCGGCACTCTTGGAGATCAGGGCACATTGCTTCAAAGTGTCGTAAATGCCAG 22707 Query 72362 CTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTG 72407 | || ||| || |||| | || || ||||| ||||| ||| Sbjct 22708 CAATCGAATCCTCGCTCATTGTTAGGAGGAAACAAGAAGACAGTTG 22753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671030852965400