Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27]
12,915 sequences; 319,757,902 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq8275 118 2e-21
seq8716 111 4e-19
seq8832 105 2e-17
seq8587 105 2e-17
seq8131 96.9 8e-15
>seq8275
Length=204344
Score = 118 bits (130), Expect = 2e-21
Identities = 110/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
|| ||||| || || | |||||||||||| || ||||||||||| ||||||||||| |||
Sbjct 61190 CCGGCAAAGATGAGTCGCTGTTGATCAGGTGGAATTCCTTCTTTGTCCTGAATCTTAGCT 61131
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
|| |||||||| | |||||| | || || || | |||||||| || ||||| ||
Sbjct 61130 TTCACATTTTCGATCGTATCGGATGCCTCCACTTCCAAAGTAATAGTTTTTCCAGTTAGA 61071
Query 104540 GTTTTTACAAATATCTGCAT 104559
||||| || || ||||||||
Sbjct 61070 GTTTTCACGAAGATCTGCAT 61051
Score = 113 bits (124), Expect = 1e-19
Identities = 109/140 (78%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
|| ||||| || || | || ||||| || || |||||||| ||||| ||||||||||||
Sbjct 59423 CCGGCAAAGATAAGTCGTTGCTGATCCGGTGGAATTCCTTCCTTATCTTGAATCTTTGCT 59364
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
|| |||||||| | || ||| | ||| ||||| ||||| || ||||| || || ||
Sbjct 59363 TTCACATTTTCAATAGTGTCGGAGGCTTCAACCTCGAGTGTGATTGTCTTCCCGGTTAGG 59304
Query 104540 GTTTTTACAAATATCTGCAT 104559
||||| ||||| ||||||||
Sbjct 59303 GTTTTCACAAAGATCTGCAT 59284
Score = 109 bits (120), Expect = 1e-18
Identities = 108/140 (77%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
|| ||||| || |||| ||| ||||| || || ||||||||||| ||||||||||| |||
Sbjct 60880 CCGGCAAAGATGAGCCGCTGCTGATCTGGCGGGATTCCTTCTTTGTCCTGAATCTTGGCT 60821
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
|| || ||||| | || || || ||| || || | ||||||||| || ||||| ||
Sbjct 60820 TTGACGTTTTCAATTGTGTCCGAAGCTTCCACTTCCAATGTAATAGTTTTTCCAGTCAGA 60761
Query 104540 GTTTTTACAAATATCTGCAT 104559
||||| || || || |||||
Sbjct 60760 GTTTTCACGAAGATTTGCAT 60741
>seq8716
Length=186993
Score = 111 bits (122), Expect = 4e-19
Identities = 112/146 (77%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 104415 GTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCT 104474
|||| || || || || || | ||| |||||||| || |||||||| |||||||||||||
Sbjct 74511 GTTTACCTGCGAAGATAAGTCGCTGCTGATCAGGCGGGATTCCTTCCTTATCCTGAATCT 74570
Query 104475 TTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAG 104534
| || || ||||| || | ||||||| | || ||||| || || ||||| || || |
Sbjct 74571 TGGCCTTCACATTCTCGATGGTATCGGAGGCCTCAACCTCCAGGGTGATAGTTTTTCCCG 74630
Query 104535 TAAGTGTTTTTACAAATATCTGCATT 104560
|||| || ||||| || || ||||||
Sbjct 74631 TAAGAGTCTTTACGAAGATTTGCATT 74656
>seq8832
Length=33236
Score = 105 bits (116), Expect = 2e-17
Identities = 108/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
|||||||| || | | ||| || || || || |||||||| ||||||||||| || ||
Sbjct 23287 CCAGCAAAGATCAATCGCTGCTGGTCTGGTGGAATTCCTTCCTTATCCTGAATTTTGGCC 23346
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
||||||||||| | ||||||| | ||| || || || || || ||||| ||||||||
Sbjct 23347 TTTACATTTTCGATGGTATCGGATGCTTCAACTTCGAGAGTGATCGTCTTTCCAGTAAGA 23406
Query 104540 GTTTTTACAAATATCTGCATT 104560
|| || || || || ||||||
Sbjct 23407 GTCTTGACGAAGATTTGCATT 23427
Score = 100 bits (110), Expect = 7e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
|| || || || || | || ||||| || || ||||| || || || |||||||| |||
Sbjct 24478 CCTGCGAAGATCAGTCGTTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGAATCTTGGCT 24537
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
|| |||||||| | ||| || || ||| || || |||||||||||||| || || ||
Sbjct 24538 TTAACATTTTCAATGGTGTCAGAAGCTTCGACTTCAAGTGTAATAGTCTTTCCTGTCAGA 24597
Query 104540 GTTTTTACAAATATCTGCAT 104559
||||| || || ||||||||
Sbjct 24598 GTTTTGACGAAAATCTGCAT 24617
Score = 96.9 bits (106), Expect = 8e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
||||| || || | | || ||||| || || ||||||||||||||||| ||||| ||
Sbjct 22986 CCAGCGAAGATCAATCGTTGCTGATCTGGGGGAATTCCTTCTTTATCCTGGATCTTGGCC 23045
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
|| || ||||| | ||| || || ||| || || || || || ||||| ||||| ||
Sbjct 23046 TTGACGTTTTCGATGGTGTCCGAAGCTTCGACTTCAAGGGTGATTGTCTTTCCAGTGAGG 23105
Query 104540 GTTTTTACAAATATCTGCATT 104560
|| || ||||| |||||||||
Sbjct 23106 GTCTTGACAAAGATCTGCATT 23126
>seq8587
Length=192155
Score = 105 bits (116), Expect = 2e-17
Identities = 108/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
|||||||| || | | || ||||| || || || |||||||| ||||| ||||| ||
Sbjct 141470 CCAGCAAAGATCAATCGTTGCTGATCTGGGGGAATCCCTTCTTTGTCCTGGATCTTGGCC 141529
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
|| |||||||| | ||||| | ||| || || || ||||||||||| ||||||||
Sbjct 141530 TTGACATTTTCAATTGTATCTGAGGCTTCGACTTCAAGAGTAATAGTCTTTCCAGTAAGA 141589
Query 104540 GTTTTTACAAATATCTGCATT 104560
|| || ||||| |||||||||
Sbjct 141590 GTCTTGACAAAGATCTGCATT 141610
Score = 100 bits (110), Expect = 7e-16
Identities = 96/123 (78%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 104438 TGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTA 104497
|| ||||| || || ||||||||||||||||| ||||| || || || ||||| | |||
Sbjct 140307 TGCTGATCTGGGGGAATTCCTTCTTTATCCTGGATCTTGGCCTTGACGTTTTCAATGGTG 140366
Query 104498 TCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGC 104557
|| || ||| || || || ||||| ||||| ||||| || || || || |||||||||
Sbjct 140367 TCCGAAGCTTCGACTTCGAGGGTAATTGTCTTTCCAGTGAGGGTCTTCACGAATATCTGC 140426
Query 104558 ATT 104560
|||
Sbjct 140427 ATT 140429
Score = 96.9 bits (106), Expect = 8e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
|||||||| || | | ||| || || || || |||||||| ||||| ||||| || ||
Sbjct 140587 CCAGCAAAGATCAATCGCTGCTGGTCTGGGGGAATTCCTTCCTTATCTTGAATTTTGGCC 140646
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
||||||||||| | ||||||| | || || || || || || ||||| ||||||||
Sbjct 140647 TTTACATTTTCGATGGTATCGGATGCCTCAACTTCGAGAGTGATTGTCTTTCCAGTAAGG 140706
Query 104540 GTTTTTACAAATATCTGCATT 104560
|| || || || || ||||||
Sbjct 140707 GTCTTGACGAAGATTTGCATT 140727
Score = 95.1 bits (104), Expect = 3e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
|| || || || || | ||| ||||| || || ||||| || || || |||||||| |||
Sbjct 141777 CCTGCGAAGATCAGTCGCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGAATCTTGGCT 141836
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
|| |||||||| | || || || ||| || || || ||||||||||| || || ||
Sbjct 141837 TTAACATTTTCAATAGTGTCAGAAGCTTCGACTTCAAGCGTAATAGTCTTTCCTGTCAGA 141896
Query 104540 GTTTTTACAAATATCTGCAT 104559
||||| || || ||||||||
Sbjct 141897 GTTTTGACGAAAATCTGCAT 141916
>seq8131
Length=46037
Score = 96.9 bits (106), Expect = 8e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
|| || || || || | ||| |||||||| || |||||||| |||||||||||||| ||
Sbjct 31587 CCTGCGAAGATAAGTCGCTGCTGATCAGGCGGAATTCCTTCCTTATCCTGAATCTTGGCC 31646
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
|| ||||| || | |||||| | || ||||| || || || || || || |||||
Sbjct 31647 TTCACATTCTCGATGGTATCAGAGGCCTCAACCTCGAGGGTGATGGTTTTTCCCGTAAGA 31706
Query 104540 GTTTTTACAAATATCTGCATT 104560
|| ||||| || || ||||||
Sbjct 31707 GTCTTTACGAAGATTTGCATT 31727
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151207874148820
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |