Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq8275 118 2e-21 seq8716 111 4e-19 seq8832 105 2e-17 seq8587 105 2e-17 seq8131 96.9 8e-15 >seq8275 Length=204344 Score = 118 bits (130), Expect = 2e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || ||||| || || | |||||||||||| || ||||||||||| ||||||||||| ||| Sbjct 61190 CCGGCAAAGATGAGTCGCTGTTGATCAGGTGGAATTCCTTCTTTGTCCTGAATCTTAGCT 61131 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || |||||||| | |||||| | || || || | |||||||| || ||||| || Sbjct 61130 TTCACATTTTCGATCGTATCGGATGCCTCCACTTCCAAAGTAATAGTTTTTCCAGTTAGA 61071 Query 104540 GTTTTTACAAATATCTGCAT 104559 ||||| || || |||||||| Sbjct 61070 GTTTTCACGAAGATCTGCAT 61051 Score = 113 bits (124), Expect = 1e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || ||||| || || | || ||||| || || |||||||| ||||| |||||||||||| Sbjct 59423 CCGGCAAAGATAAGTCGTTGCTGATCCGGTGGAATTCCTTCCTTATCTTGAATCTTTGCT 59364 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || |||||||| | || ||| | ||| ||||| ||||| || ||||| || || || Sbjct 59363 TTCACATTTTCAATAGTGTCGGAGGCTTCAACCTCGAGTGTGATTGTCTTCCCGGTTAGG 59304 Query 104540 GTTTTTACAAATATCTGCAT 104559 ||||| ||||| |||||||| Sbjct 59303 GTTTTCACAAAGATCTGCAT 59284 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || ||||| || |||| ||| ||||| || || ||||||||||| ||||||||||| ||| Sbjct 60880 CCGGCAAAGATGAGCCGCTGCTGATCTGGCGGGATTCCTTCTTTGTCCTGAATCTTGGCT 60821 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || || ||||| | || || || ||| || || | ||||||||| || ||||| || Sbjct 60820 TTGACGTTTTCAATTGTGTCCGAAGCTTCCACTTCCAATGTAATAGTTTTTCCAGTCAGA 60761 Query 104540 GTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| Sbjct 60760 GTTTTCACGAAGATTTGCAT 60741 >seq8716 Length=186993 Score = 111 bits (122), Expect = 4e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 104415 GTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCT 104474 |||| || || || || || | ||| |||||||| || |||||||| ||||||||||||| Sbjct 74511 GTTTACCTGCGAAGATAAGTCGCTGCTGATCAGGCGGGATTCCTTCCTTATCCTGAATCT 74570 Query 104475 TTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAG 104534 | || || ||||| || | ||||||| | || ||||| || || ||||| || || | Sbjct 74571 TGGCCTTCACATTCTCGATGGTATCGGAGGCCTCAACCTCCAGGGTGATAGTTTTTCCCG 74630 Query 104535 TAAGTGTTTTTACAAATATCTGCATT 104560 |||| || ||||| || || |||||| Sbjct 74631 TAAGAGTCTTTACGAAGATTTGCATT 74656 >seq8832 Length=33236 Score = 105 bits (116), Expect = 2e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 |||||||| || | | ||| || || || || |||||||| ||||||||||| || || Sbjct 23287 CCAGCAAAGATCAATCGCTGCTGGTCTGGTGGAATTCCTTCCTTATCCTGAATTTTGGCC 23346 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 ||||||||||| | ||||||| | ||| || || || || || ||||| |||||||| Sbjct 23347 TTTACATTTTCGATGGTATCGGATGCTTCAACTTCGAGAGTGATCGTCTTTCCAGTAAGA 23406 Query 104540 GTTTTTACAAATATCTGCATT 104560 || || || || || |||||| Sbjct 23407 GTCTTGACGAAGATTTGCATT 23427 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || || || || || | || ||||| || || ||||| || || || |||||||| ||| Sbjct 24478 CCTGCGAAGATCAGTCGTTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGAATCTTGGCT 24537 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || |||||||| | ||| || || ||| || || |||||||||||||| || || || Sbjct 24538 TTAACATTTTCAATGGTGTCAGAAGCTTCGACTTCAAGTGTAATAGTCTTTCCTGTCAGA 24597 Query 104540 GTTTTTACAAATATCTGCAT 104559 ||||| || || |||||||| Sbjct 24598 GTTTTGACGAAAATCTGCAT 24617 Score = 96.9 bits (106), Expect = 8e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||| || || | | || ||||| || || ||||||||||||||||| ||||| || Sbjct 22986 CCAGCGAAGATCAATCGTTGCTGATCTGGGGGAATTCCTTCTTTATCCTGGATCTTGGCC 23045 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || || ||||| | ||| || || ||| || || || || || ||||| ||||| || Sbjct 23046 TTGACGTTTTCGATGGTGTCCGAAGCTTCGACTTCAAGGGTGATTGTCTTTCCAGTGAGG 23105 Query 104540 GTTTTTACAAATATCTGCATT 104560 || || ||||| ||||||||| Sbjct 23106 GTCTTGACAAAGATCTGCATT 23126 >seq8587 Length=192155 Score = 105 bits (116), Expect = 2e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 |||||||| || | | || ||||| || || || |||||||| ||||| ||||| || Sbjct 141470 CCAGCAAAGATCAATCGTTGCTGATCTGGGGGAATCCCTTCTTTGTCCTGGATCTTGGCC 141529 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || |||||||| | ||||| | ||| || || || ||||||||||| |||||||| Sbjct 141530 TTGACATTTTCAATTGTATCTGAGGCTTCGACTTCAAGAGTAATAGTCTTTCCAGTAAGA 141589 Query 104540 GTTTTTACAAATATCTGCATT 104560 || || ||||| ||||||||| Sbjct 141590 GTCTTGACAAAGATCTGCATT 141610 Score = 100 bits (110), Expect = 7e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 104438 TGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTA 104497 || ||||| || || ||||||||||||||||| ||||| || || || ||||| | ||| Sbjct 140307 TGCTGATCTGGGGGAATTCCTTCTTTATCCTGGATCTTGGCCTTGACGTTTTCAATGGTG 140366 Query 104498 TCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGC 104557 || || ||| || || || ||||| ||||| ||||| || || || || ||||||||| Sbjct 140367 TCCGAAGCTTCGACTTCGAGGGTAATTGTCTTTCCAGTGAGGGTCTTCACGAATATCTGC 140426 Query 104558 ATT 104560 ||| Sbjct 140427 ATT 140429 Score = 96.9 bits (106), Expect = 8e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 |||||||| || | | ||| || || || || |||||||| ||||| ||||| || || Sbjct 140587 CCAGCAAAGATCAATCGCTGCTGGTCTGGGGGAATTCCTTCCTTATCTTGAATTTTGGCC 140646 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 ||||||||||| | ||||||| | || || || || || || ||||| |||||||| Sbjct 140647 TTTACATTTTCGATGGTATCGGATGCCTCAACTTCGAGAGTGATTGTCTTTCCAGTAAGG 140706 Query 104540 GTTTTTACAAATATCTGCATT 104560 || || || || || |||||| Sbjct 140707 GTCTTGACGAAGATTTGCATT 140727 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || || || || || | ||| ||||| || || ||||| || || || |||||||| ||| Sbjct 141777 CCTGCGAAGATCAGTCGCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGAATCTTGGCT 141836 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || |||||||| | || || || ||| || || || ||||||||||| || || || Sbjct 141837 TTAACATTTTCAATAGTGTCAGAAGCTTCGACTTCAAGCGTAATAGTCTTTCCTGTCAGA 141896 Query 104540 GTTTTTACAAATATCTGCAT 104559 ||||| || || |||||||| Sbjct 141897 GTTTTGACGAAAATCTGCAT 141916 >seq8131 Length=46037 Score = 96.9 bits (106), Expect = 8e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || || || || || | ||| |||||||| || |||||||| |||||||||||||| || Sbjct 31587 CCTGCGAAGATAAGTCGCTGCTGATCAGGCGGAATTCCTTCCTTATCCTGAATCTTGGCC 31646 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || ||||| || | |||||| | || ||||| || || || || || || ||||| Sbjct 31647 TTCACATTCTCGATGGTATCAGAGGCCTCAACCTCGAGGGTGATGGTTTTTCCCGTAAGA 31706 Query 104540 GTTTTTACAAATATCTGCATT 104560 || ||||| || || |||||| Sbjct 31707 GTCTTTACGAAGATTTGCATT 31727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151207874148820