Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27]
12,915 sequences; 319,757,902 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq8587 105 6e-18
seq8832 102 7e-17
seq8275 91.5 1e-13
>seq8587
Length=192155
Score = 105 bits (116), Expect = 6e-18
Identities = 105/136 (77%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931
||||||| |||| |||||||||||| ||||| ||||||||||| | || || |||||||
Sbjct 141474 CAAAGATCAATCGTTGCTGATCTGGGGGAATCCCTTCTTTGTCCTGGATCTTGGCCTTGA 141533
Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991
| | | || || | | ||||| |||| || || || |||||||||||||| |
Sbjct 141534 CATTTTCAATTGTATCTGAGGCTTCGACTTCAAGAGTAATAGTCTTTCCAGTAAGAGTCT 141593
Query 94992 TCACAAAGATCTGCAT 95007
| ||||||||||||||
Sbjct 141594 TGACAAAGATCTGCAT 141609
Score = 91.5 bits (100), Expect = 1e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 94868 CCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCC 94927
||| | ||||| ||||| ||||||||||| ||||| ||||| ||||| | || || |||
Sbjct 141178 CCGGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCC 141237
Query 94928 TTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGA 94987
|| ||| | | || || | | ||||| || | || ||||| |||||||| ||
Sbjct 141238 TTCACGTTTTCAATCGTATCCGAGGCTTCGACTTCGAGAGTAATGGTCTTTCCAGTGAGG 141297
Query 94988 GTTTTCACAAAGATCTGCAT 95007
|| || ||||||||||||||
Sbjct 141298 GTCTTGACAAAGATCTGCAT 141317
Score = 84.2 bits (92), Expect = 2e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 94874 AAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACG 94933
||||| |||| |||||||||||| ||||| |||||||| || | || || |||||||||
Sbjct 140295 AAGATCAATCGTTGCTGATCTGGGGGAATTCCTTCTTTATCCTGGATCTTGGCCTTGACG 140354
Query 94934 GCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTC 94993
| | ||||| | ||||| || | || || || |||||||| || || |||
Sbjct 140355 TTTTCAATGGTGTCCGAAGCTTCGACTTCGAGGGTAATTGTCTTTCCAGTGAGGGTCTTC 140414
Query 94994 ACAAAGATCTGCAT 95007
|| || ||||||||
Sbjct 140415 ACGAATATCTGCAT 140428
Score = 84.2 bits (92), Expect = 2e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 94874 AAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACG 94933
||||| |||| ||||| ||||| ||||| || || ||||| | |||||| |||||||||
Sbjct 140888 AAGATCAATCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGAATTTTAGCCTTGACG 140947
Query 94934 GCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTC 94993
| | || || | ||||| |||| || || || ||||||||||| || ||
Sbjct 140948 TTCTCAATGGTATCCGAAGCTTCGACTTCAAGGGTAATTGTCTTTCCAGTAAGGGTCTTG 141007
Query 94994 ACAAAGATCTGCAT 95007
|| |||||||||||
Sbjct 141008 ACGAAGATCTGCAT 141021
>seq8832
Length=33236
Score = 102 bits (112), Expect = 7e-17
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 94874 AAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACG 94933
||||| |||| |||||||||||| ||||| |||||||| || | || || |||||||||
Sbjct 22992 AAGATCAATCGTTGCTGATCTGGGGGAATTCCTTCTTTATCCTGGATCTTGGCCTTGACG 23051
Query 94934 GCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTC 94993
||| ||||| | ||||| |||| ||||| || |||||||| || || ||
Sbjct 23052 TTTTCGATGGTGTCCGAAGCTTCGACTTCAAGGGTGATTGTCTTTCCAGTGAGGGTCTTG 23111
Query 94994 ACAAAGATCTGCAT 95007
||||||||||||||
Sbjct 23112 ACAAAGATCTGCAT 23125
Score = 93.3 bits (102), Expect = 4e-14
Identities = 102/136 (75%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931
||||||| |||| |||||||||||| ||||| ||||| ||||| | || || ||||| |
Sbjct 24174 CAAAGATCAATCGTTGCTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTCA 24233
Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991
| | | ||| || | | ||||| || | |||||||| |||||||| || || |
Sbjct 24234 CATTTTCAATAGTATCCGAGGCTTCGACTTCGAGGGTGATGGTCTTTCCAGTGAGGGTCT 24293
Query 94992 TCACAAAGATCTGCAT 95007
| || |||||||||||
Sbjct 24294 TAACGAAGATCTGCAT 24309
>seq8275
Length=204344
Score = 91.5 bits (100), Expect = 1e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 94868 CCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCC 94927
||| ||||||| | || ||||||||| || ||||| ||||| || || | ||| |||||
Sbjct 59423 CCGGCAAAGATAAGTCGTTGCTGATCCGGTGGAATTCCTTCCTTATCTTGAATCTTTGCT 59364
Query 94928 TTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGA 94987
|| || | | |||||| | | || || || | ||||| || || || || ||
Sbjct 59363 TTCACATTTTCAATAGTGTCGGAGGCTTCAACCTCGAGTGTGATTGTCTTCCCGGTTAGG 59304
Query 94988 GTTTTCACAAAGATCTGCATGCT 95010
|||||||||||||||||||||||
Sbjct 59303 GTTTTCACAAAGATCTGCATGCT 59281
Score = 89.7 bits (98), Expect = 5e-13
Identities = 105/142 (74%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 94868 CCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCC 94927
||| ||||||| | | ||||||||||| || || ||||||||||| | ||| || ||
Sbjct 60880 CCGGCAAAGATGAGCCGCTGCTGATCTGGCGGGATTCCTTCTTTGTCCTGAATCTTGGCT 60821
Query 94928 TTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGA 94987
|||||| | | ||||| | || || || | || || ||||||||||| |||
Sbjct 60820 TTGACGTTTTCAATTGTGTCCGAAGCTTCCACTTCCAATGTAATAGTTTTTCCAGTCAGA 60761
Query 94988 GTTTTCACAAAGATCTGCATGC 95009
|||||||| ||||| |||||||
Sbjct 60760 GTTTTCACGAAGATTTGCATGC 60739
Score = 86.0 bits (94), Expect = 6e-12
Identities = 104/142 (73%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 94868 CCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCC 94927
||| ||||||| | || || ||||| || ||||| ||||||||||| | ||| || ||
Sbjct 61190 CCGGCAAAGATGAGTCGCTGTTGATCAGGTGGAATTCCTTCTTTGTCCTGAATCTTAGCT 61131
Query 94928 TTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGA 94987
|| || ||| || || | || || || | || || ||||||||||| |||
Sbjct 61130 TTCACATTTTCGATCGTATCGGATGCCTCCACTTCCAAAGTAATAGTTTTTCCAGTTAGA 61071
Query 94988 GTTTTCACAAAGATCTGCATGC 95009
|||||||| |||||||||||||
Sbjct 61070 GTTTTCACGAAGATCTGCATGC 61049
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448218828989400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |