Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq12098 215 8e-52 seq12680 197 2e-46 seq12545 178 2e-40 seq9111 161 2e-35 seq11659 93.3 7e-15 >seq12098 Length=305187 Score = 215 bits (238), Expect = 8e-52 Identities = 208/267 (78%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| | |||||| || |||||||||||||||||||||||||||||| Sbjct 170977 GCCAAGCGCCATCGCAAAGTTCTTCGTGACAACATCCAAGGAATCACCAAGCCAGCTATC 171036 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| ||||||||||||||||| || ||| ||||||| || |||| ||||| | Sbjct 171037 CGTCGTCTCGCTCGTCGTGGTGGAGTGAAACGTATCTCTGGTCTGATCTACGAAGAAACC 171096 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| ||||| | ||||| ||| || |||| ||||||| || ||| |||| Sbjct 171097 CGAGGAGTTCTGAAGGTGTTCCTTGAGAATGTGATCCGTGATGCTGTCACCTACTGCGAG 171156 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || | ||||| |||||| | ||||| | ||||| || ||||||||||||| Sbjct 171157 CATGCCAAGAGAAAGACCGTCACCGCTATGGACGTTGTCTACGCTCTGAAACGTCAAGGA 171216 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || ||||| ||| | ||| Sbjct 171217 CGTACTCTGTACGGTTTCGGAGGATAA 171243 Score = 192 bits (212), Expect = 9e-45 Identities = 181/231 (78%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 16469 CAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTC 16528 |||||||||||||||||||||||||||||||| ||||||||||||||||| || ||| || Sbjct 181444 CAAGGAATCACCAAGCCAGCTATCCGTCGTCTCGCTCGTCGTGGTGGAGTAAAACGTATC 181503 Query 16529 TCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATC 16588 ||||| || |||| ||||| | ||||| ||| ||||| | ||||| ||| || ||| Sbjct 181504 TCTGGTCTGATCTACGAAGAAACTCGTGGAGTTCTGAAGGTGTTCCTTGAGAATGTGATC 181563 Query 16589 CATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATC 16648 | ||||||| || ||| |||||| || || | ||||| |||||| | ||||| | Sbjct 181564 CGTGATGCTGTCACCTACTGCGAGCATGCCAAGAGAAAGACCGTCACCGCTATGGACGTT 181623 Query 16649 GTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||||| || ||||||||||||| |||| | || ||||| ||| | ||| Sbjct 181624 GTCTACGCTCTGAAACGTCAAGGACGTACCCTGTACGGTTTCGGAGGATAA 181674 >seq12680 Length=291999 Score = 197 bits (218), Expect = 2e-46 Identities = 204/267 (76%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| | |||||| || ||||||||||||||||||||||| |||||| Sbjct 149260 GCCAAGCGCCATCGCAAAGTTCTTCGTGACAACATCCAAGGAATCACCAAGCCGGCTATC 149319 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| ||| ||||||||||||| || ||| ||||||| || |||| ||||| | | Sbjct 149320 CGTCGTCTCGCTTGTCGTGGTGGAGTGAAACGTATCTCTGGTCTGATCTACGAAGAAACT 149379 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| | | ||||| | | ||| ||| || |||| ||||||| || ||| |||| Sbjct 149380 CGTGGAGCTCTGAAGGTGTACCTTGAGAAAGTGATCCGTGATGCTGTCACCTACTGCGAG 149439 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || | ||||| || ||| | || || || |||| || ||||| ||||||| Sbjct 149440 CATGCCAAGAGAAAGACCGTAACCGCTATAGACGTCTTCTACGCTCTGAAATGTCAAGGA 149499 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | |||||||| ||| | ||| Sbjct 149500 CGTACTCTGTATGGTTTCGGAGGATAA 149526 >seq12545 Length=293880 Score = 178 bits (196), Expect = 2e-40 Identities = 200/268 (75%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||| || ||||| | | ||||| || ||||||||||| ||||| |||||||| || Sbjct 49939 GCTAAACGCCATCGTAAAGTACTTCGTGACAACATCCAAGGGATCACGAAGCCAGCAATT 49880 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| || | ||||||||||| || ||| | ||||| || |||| ||||||| Sbjct 49879 CGACGTCTAGCCAGGCGTGGTGGAGTGAAACGTATTTCTGGCCTGATCTACGAAGAGACA 49820 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| |||| | ||||| | | ||||| | ||||||| || |||| || Sbjct 49819 CGTGGTGTACTGAAAGTATTCCTGGAAAATGTTATTCGTGATGCTGTCACCTATTGTGAA 49760 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || ||||| |||||||| || |||||||| | || ||||| |||||||||| || Sbjct 49759 CATGCAAAACGAAAGACTGTGACTGCCATGGATGTTGTTTATGCTCTGAAACGTCAGGGA 49700 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700 |||| |||| ||||| ||| | |||| Sbjct 49699 CGTACTCTTTACGGTTTCGGAGGCTAAT 49672 >seq9111 Length=29016 Score = 161 bits (178), Expect = 2e-35 Identities = 190/253 (75%), Gaps = 8/253 (3%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| || |||||||||| ||||||||||| |||||||||||||| ||||||||||| Sbjct 16865 TCTTCGTGACAACATCCAAGTAATCACCAAGCTGGCTATCCGTCGTCTCGCTCGTCGTGG 16924 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || || || ||| ||||||| || | | ||||| | ||||| ||| ||||| | || Sbjct 16925 TGAGGTGAAACGTATCTCTGGCCTGATTCACGAAGAAACTCGTGGAGTTCTGAAGGTGTT 16984 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATAC--CGAGCACGCTA----AACGTAA 16626 | | | | | |||| ||||||| | |||| ||| |||||| || | || | || Sbjct 16985 CTTTGAAAATATGATCCGTGATGCTGT-CACT-TACTGCGAGCATGCCAAGAGAAAGAAA 17042 Query 16627 GACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGG 16686 ||| ||||| | ||||| ||||||| || ||||||||||||| |||| | ||||| Sbjct 17043 GACCCTCACCGCTATGGACGTCGTCTACGCTCTGAAACGTCAAGGACGTACTCTGTATGG 17102 Query 16687 TTTTGGAAGTTAA 16699 ||| ||| | ||| Sbjct 17103 TTTCGGAGGATAA 17115 >seq11659 Length=113746 Score = 93.3 bits (102), Expect = 7e-15 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| | |||||| || |||||||||||||||||||||||||||||| Sbjct 62271 GCCAAGCGCCATCGCAAAGTTCTTCGTGACAACATCCAAGGAATCACCAAGCCAGCTATC 62330 Query 16493 CGTCGTCTGGCTCG 16506 ||||||| ||||| Sbjct 62331 CGTCGTCCCGCTCG 62344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79063391725095