Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27]
12,915 sequences; 319,757,902 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq12098 215 8e-52
seq12680 197 2e-46
seq12545 178 2e-40
seq9111 161 2e-35
seq11659 93.3 7e-15
>seq12098
Length=305187
Score = 215 bits (238), Expect = 8e-52
Identities = 208/267 (78%), Gaps = 0/267 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| ||||| ||||||| | |||||| || ||||||||||||||||||||||||||||||
Sbjct 170977 GCCAAGCGCCATCGCAAAGTTCTTCGTGACAACATCCAAGGAATCACCAAGCCAGCTATC 171036
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|||||||| ||||||||||||||||| || ||| ||||||| || |||| ||||| |
Sbjct 171037 CGTCGTCTCGCTCGTCGTGGTGGAGTGAAACGTATCTCTGGTCTGATCTACGAAGAAACC 171096
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| | ||| ||||| | ||||| ||| || |||| ||||||| || ||| ||||
Sbjct 171097 CGAGGAGTTCTGAAGGTGTTCCTTGAGAATGTGATCCGTGATGCTGTCACCTACTGCGAG 171156
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|| || || | ||||| |||||| | ||||| | ||||| || |||||||||||||
Sbjct 171157 CATGCCAAGAGAAAGACCGTCACCGCTATGGACGTTGTCTACGCTCTGAAACGTCAAGGA 171216
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699
|||| | || ||||| ||| | |||
Sbjct 171217 CGTACTCTGTACGGTTTCGGAGGATAA 171243
Score = 192 bits (212), Expect = 9e-45
Identities = 181/231 (78%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 16469 CAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTC 16528
|||||||||||||||||||||||||||||||| ||||||||||||||||| || ||| ||
Sbjct 181444 CAAGGAATCACCAAGCCAGCTATCCGTCGTCTCGCTCGTCGTGGTGGAGTAAAACGTATC 181503
Query 16529 TCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATC 16588
||||| || |||| ||||| | ||||| ||| ||||| | ||||| ||| || |||
Sbjct 181504 TCTGGTCTGATCTACGAAGAAACTCGTGGAGTTCTGAAGGTGTTCCTTGAGAATGTGATC 181563
Query 16589 CATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATC 16648
| ||||||| || ||| |||||| || || | ||||| |||||| | ||||| |
Sbjct 181564 CGTGATGCTGTCACCTACTGCGAGCATGCCAAGAGAAAGACCGTCACCGCTATGGACGTT 181623
Query 16649 GTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699
||||| || ||||||||||||| |||| | || ||||| ||| | |||
Sbjct 181624 GTCTACGCTCTGAAACGTCAAGGACGTACCCTGTACGGTTTCGGAGGATAA 181674
>seq12680
Length=291999
Score = 197 bits (218), Expect = 2e-46
Identities = 204/267 (76%), Gaps = 0/267 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| ||||| ||||||| | |||||| || ||||||||||||||||||||||| ||||||
Sbjct 149260 GCCAAGCGCCATCGCAAAGTTCTTCGTGACAACATCCAAGGAATCACCAAGCCGGCTATC 149319
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|||||||| ||| ||||||||||||| || ||| ||||||| || |||| ||||| | |
Sbjct 149320 CGTCGTCTCGCTTGTCGTGGTGGAGTGAAACGTATCTCTGGTCTGATCTACGAAGAAACT 149379
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|||| | | ||||| | | ||| ||| || |||| ||||||| || ||| ||||
Sbjct 149380 CGTGGAGCTCTGAAGGTGTACCTTGAGAAAGTGATCCGTGATGCTGTCACCTACTGCGAG 149439
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|| || || | ||||| || ||| | || || || |||| || ||||| |||||||
Sbjct 149440 CATGCCAAGAGAAAGACCGTAACCGCTATAGACGTCTTCTACGCTCTGAAATGTCAAGGA 149499
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699
|||| | |||||||| ||| | |||
Sbjct 149500 CGTACTCTGTATGGTTTCGGAGGATAA 149526
>seq12545
Length=293880
Score = 178 bits (196), Expect = 2e-40
Identities = 200/268 (75%), Gaps = 0/268 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
||||| || ||||| | | ||||| || ||||||||||| ||||| |||||||| ||
Sbjct 49939 GCTAAACGCCATCGTAAAGTACTTCGTGACAACATCCAAGGGATCACGAAGCCAGCAATT 49880
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| ||||| || | ||||||||||| || ||| | ||||| || |||| |||||||
Sbjct 49879 CGACGTCTAGCCAGGCGTGGTGGAGTGAAACGTATTTCTGGCCTGATCTACGAAGAGACA 49820
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|||| ||| |||| | ||||| | | ||||| | ||||||| || |||| ||
Sbjct 49819 CGTGGTGTACTGAAAGTATTCCTGGAAAATGTTATTCGTGATGCTGTCACCTATTGTGAA 49760
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|| || ||||| |||||||| || |||||||| | || ||||| |||||||||| ||
Sbjct 49759 CATGCAAAACGAAAGACTGTGACTGCCATGGATGTTGTTTATGCTCTGAAACGTCAGGGA 49700
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700
|||| |||| ||||| ||| | ||||
Sbjct 49699 CGTACTCTTTACGGTTTCGGAGGCTAAT 49672
>seq9111
Length=29016
Score = 161 bits (178), Expect = 2e-35
Identities = 190/253 (75%), Gaps = 8/253 (3%)
Strand=Plus/Plus
Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512
|||||| || |||||||||| ||||||||||| |||||||||||||| |||||||||||
Sbjct 16865 TCTTCGTGACAACATCCAAGTAATCACCAAGCTGGCTATCCGTCGTCTCGCTCGTCGTGG 16924
Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572
|| || || ||| ||||||| || | | ||||| | ||||| ||| ||||| | ||
Sbjct 16925 TGAGGTGAAACGTATCTCTGGCCTGATTCACGAAGAAACTCGTGGAGTTCTGAAGGTGTT 16984
Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATAC--CGAGCACGCTA----AACGTAA 16626
| | | | | |||| ||||||| | |||| ||| |||||| || | || | ||
Sbjct 16985 CTTTGAAAATATGATCCGTGATGCTGT-CACT-TACTGCGAGCATGCCAAGAGAAAGAAA 17042
Query 16627 GACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGG 16686
||| ||||| | ||||| ||||||| || ||||||||||||| |||| | |||||
Sbjct 17043 GACCCTCACCGCTATGGACGTCGTCTACGCTCTGAAACGTCAAGGACGTACTCTGTATGG 17102
Query 16687 TTTTGGAAGTTAA 16699
||| ||| | |||
Sbjct 17103 TTTCGGAGGATAA 17115
>seq11659
Length=113746
Score = 93.3 bits (102), Expect = 7e-15
Identities = 65/74 (88%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| ||||| ||||||| | |||||| || ||||||||||||||||||||||||||||||
Sbjct 62271 GCCAAGCGCCATCGCAAAGTTCTTCGTGACAACATCCAAGGAATCACCAAGCCAGCTATC 62330
Query 16493 CGTCGTCTGGCTCG 16506
||||||| |||||
Sbjct 62331 CGTCGTCCCGCTCG 62344
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79063391725095
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |