Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq899 95.1 2e-14 seq7663 89.7 6e-13 >seq899 Length=82215 Score = 95.1 bits (104), Expect = 2e-14 Identities = 187/274 (68%), Gaps = 2/274 (1%) Strand=Plus/Minus Query 63317 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63376 ||| |||| |||||||||||||| ||| || || | |||| || || || || || || Sbjct 23002 AATGTCAGCATGCCACGGTTCCAGGTAGATTGCAAATGCTCCCGGTCGCTTATTACCGCC 22943 Query 63377 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63436 || || | ||| | || ||||| || || || | | ||| ||||| | || || || Sbjct 22942 TTGGTCCACGTAACGTGCAGTGTTGTTGTATACACGAAGCATCGGAATCAAGCCATTAGA 22883 Query 63437 TATACCATTGGTACCGGAGAT-ATAGCTTCCACTGGCACGAATATTACTAATTGATAGAC 63495 | | ||||| || || | || | || |||| | || | ||||| | |||| Sbjct 22882 TGTGCCATTTGTTCCCGCAATCAGAG-ATCCAGTTGCTCTGATATTGTGCACGTTCAGAC 22824 Query 63496 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCT 63555 ||||||| || || | |||||||| | ||| ||| | || || ||||| ||||| || Sbjct 22823 CTATTCCACCGGCACTCTTAGAGATCAGTGCACATTGCTTCAAAGTGTCGTAGATGCCAG 22764 Query 63556 CTATGCTATCATCGATCATGTTAAGTAGAAAACA 63589 | ||| ||| ||| |||| | || || ||||| Sbjct 22763 CAATGGAATCCTCGCTCATTGTCAGAAGGAAACA 22730 Score = 89.7 bits (98), Expect = 6e-13 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 63972 GTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGT 64031 |||| ||| || | ||| || ||||| ||||| ||||| ||||||||||| || ||||| Sbjct 22004 GTTTTCTTATGCAAATTGGAAACGGCGATTCTAGCGGCAAGAATGGCATAGTCAGGATGC 21945 Query 64032 TGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACT 64091 || || || | || || |||| || || | |||||| ||| || || | |||| Sbjct 21944 TGAGTGGTCATCGAAGCCGCAGTTTCAGCAGCTAAGTTGTCCAGTTCCACTGTAGATACT 21885 Query 64092 CCATTATATATTCCTTGAATAACCTTCATAGCTA 64125 || || || | ||| |||||||||||| |||| Sbjct 21884 CCTTTGTAGAGTCCAGCAATAACCTTCATCGCTA 21851 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 63611 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63670 |||||||||||| || | || |||||||| || || || || ||| | ||||| Sbjct 22600 AGTTCCCGCATTGAAAAGCGTGGGAGAAGCATGGGTGAAGTATCGCTCACTCATTAGATC 22541 Query 63671 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63730 ||||||||| || |||| || || ||| ||||||||| | ||||| ||||| | Sbjct 22540 GTACGTCTCGATTGCTGCATCAATGTCCTCGCCATGAATTCCAATAGCGACTCGCATAAG 22481 Query 63731 CATGTGCTGAGGTCTTTCAACGATCT 63756 |||||||||||| | |||| ||| || Sbjct 22480 CATGTGCTGAGGACGTTCAGCGACCT 22455 >seq7663 Length=436145 Score = 89.7 bits (98), Expect = 6e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 33801 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATA 33860 ||| |||||||||||||||||||| || | || ||||| || | | ||| ||||||| Sbjct 297443 TACCTCTTCCACTGTCCAAAATGACGCAACAGCTTTTTTGTAGAAGGCCCAAATGTCATG 297384 Query 33861 ATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 33897 ||| | || |||||||| ||||||||||| |||||| Sbjct 297383 ATACTTGAGGGGGAAAATGACAAATCTATTCGGATTT 297347 Score = 84.2 bits (92), Expect = 3e-11 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 33339 AATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATAT 33398 ||| |||||||| ||| ||||| |||||||| || || | ||| || |||||||| || Sbjct 298159 AATGAGTTCGTTAGAATGAGTGAGACCGGGCATCAGTCCCCTCTTCTTCAGCCAAAAAAT 298100 Query 33399 GGAAGCGAATGATCCAGAAAAGAAGATTCCT 33429 ||||||||| || ||||| || || |||||| Sbjct 298099 GGAAGCGAACGAACCAGAGAAAAATATTCCT 298069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622846632961400