Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq10431 122 6e-23 seq7329 95.1 8e-15 seq229 95.1 8e-15 seq8275 87.8 1e-12 >seq10431 Length=139373 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 87227 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGTTAGGGACAGTGGGAATCTCGT 87168 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||||||||| || |||| |||||| Sbjct 87167 TAATCCATTCATGCGCGTCAGTAGTTAGCTGACGA 87133 Score = 111 bits (122), Expect = 1e-19 Identities = 79/91 (87%), Gaps = 5/91 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 98498 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGTTAGGGACAGTGGGAATCTCGT 98557 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATG 25987 |||||| ||||||||||||| | ||| ||| Sbjct 98558 TAATCCATTCATGCGCGTCAGTTTTTATATG 98588 Score = 109 bits (120), Expect = 4e-19 Identities = 72/80 (90%), Gaps = 5/80 (6%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 90876 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGTTAGGGACAGTGGGAATCTCGT 90935 Query 25957 TAATCCTTTCATGCGCGTCA 25976 |||||| ||||||||||||| Sbjct 90936 TAATCCATTCATGCGCGTCA 90955 Score = 105 bits (116), Expect = 4e-18 Identities = 75/86 (87%), Gaps = 5/86 (6%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 89241 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGTTAGGGACAGTGGGAATCTCGT 89182 Query 25957 TAATCCTTTCATGCGCGTCACTAATT 25982 |||||| || |||||||||| | ||| Sbjct 89181 TAATCCATTAATGCGCGTCAGTTATT 89156 >seq7329 Length=213854 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||| ||||||||| |||| ||||||||| ||||||| |||| Sbjct 12060 CTCTCTCTTCAAAGTTCTTTGCAACTTTCCTTCACAGTACTTGTTTGCTATCGAATTCGC 12001 Query 20007 GGTAATATTTAGCCTTA 20023 | ||||||||||||| Sbjct 12000 GTCTATATTTAGCCTTA 11984 >seq229 Length=2155 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||| ||||||||| |||| ||||||||| ||||||| |||| Sbjct 79 CTCTCTCTTCAAAGTTCTTTGCAACTTTCCTTCACAGTACTTGTTTGCTATCGAATTCGC 138 Query 20007 GGTAATATTTAGCCTTA 20023 | ||||||||||||| Sbjct 139 GTCTATATTTAGCCTTA 155 >seq8275 Length=204344 Score = 87.8 bits (96), Expect = 1e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 38178 CCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGC 38237 |||||||| || || || |||||||| | || | |||||||||||| ||| || Sbjct 61190 CCGGCAAAGATGAGTCGCTGTTGATCAGGTGGAATTCCTTCTTTGTCCTGAATCTTAGCT 61131 Query 38238 TTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAG 38297 |||||||| | || ||||| || ||||| || ||||||||||| || || | Sbjct 61130 TTCACATTTTCGATCGTATCGGATGCCTCCACTTCCAAAGTAATAGTTTTTCCAGTTAGA 61071 Query 38298 GTTTTCACGAATATCTGCATG 38318 ||||||||||| ||||||||| Sbjct 61070 GTTTTCACGAAGATCTGCATG 61050 Score = 84.2 bits (92), Expect = 1e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 38178 CCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGC 38237 |||||||| || || || || ||||| | |||| |||||||||||| ||| || Sbjct 60880 CCGGCAAAGATGAGCCGCTGCTGATCTGGCGGGATTCCTTCTTTGTCCTGAATCTTGGCT 60821 Query 38238 TTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAG 38297 || || || | | || || | ||| ||||| |||||||||||||| || |||| Sbjct 60820 TTGACGTTTTCAATTGTGTCCGAAGCTTCCACTTCCAATGTAATAGTTTTTCCAGTCAGA 60761 Query 38298 GTTTTCACGAATATCTGCATG 38318 ||||||||||| || |||||| Sbjct 60760 GTTTTCACGAAGATTTGCATG 60740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334894478787365