Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq899 95.1 2e-14 seq7663 86.0 8e-12 seq7056 86.0 8e-12 >seq899 Length=82215 Score = 95.1 bits (104), Expect = 2e-14 Identities = 187/274 (68%), Gaps = 2/274 (1%) Strand=Plus/Minus Query 63172 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63231 ||| |||| |||||||||||||| ||| || || | |||| || || || || || || Sbjct 23002 AATGTCAGCATGCCACGGTTCCAGGTAGATTGCAAATGCTCCCGGTCGCTTATTACCGCC 22943 Query 63232 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 63291 || || | ||| | || ||||| || || || | | ||| ||||| | ||||| || Sbjct 22942 TTGGTCCACGTAACGTGCAGTGTTGTTGTATACACGAAGCATCGGAATCAAGCCATTAGA 22883 Query 63292 TGTACCATTGGTCCCTGAGAT-ATAGCTTCCACTGGCACGAATATTACTAATTGATAGAC 63350 ||| ||||| || || | || | || |||| | || | ||||| | |||| Sbjct 22882 TGTGCCATTTGTTCCCGCAATCAGAG-ATCCAGTTGCTCTGATATTGTGCACGTTCAGAC 22824 Query 63351 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 63410 ||||||| || || | |||||||| | ||| ||| | || || || || |||||||| Sbjct 22823 CTATTCCACCGGCACTCTTAGAGATCAGTGCACATTGCTTCAAAGTGTCGTAGATGCCAG 22764 Query 63411 CTATACTATCATCCATCATGTTAAGTAGAAAACA 63444 | || ||| || |||| | || || ||||| Sbjct 22763 CAATGGAATCCTCGCTCATTGTCAGAAGGAAACA 22730 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525 |||||||||||| || | || |||||||| || || || || ||| | ||||| Sbjct 22600 AGTTCCCGCATTGAAAAGCGTGGGAGAAGCATGGGTGAAGTATCGCTCACTCATTAGATC 22541 Query 63526 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63585 ||||||||| || |||| || || ||| ||||||||| | ||||| ||||| | Sbjct 22540 GTACGTCTCGATTGCTGCATCAATGTCCTCGCCATGAATTCCAATAGCGACTCGCATAAG 22481 Query 63586 CATGTGCTGAGGTCTTTCAACGATCT 63611 |||||||||||| | |||| ||| || Sbjct 22480 CATGTGCTGAGGACGTTCAGCGACCT 22455 >seq7663 Length=436145 Score = 86.0 bits (94), Expect = 8e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 32921 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 32980 |||| | | ||| || ||||| | |||||||||||| || ||||| ||||| ||||| Sbjct 297825 ATCTCTGATATAGGTCTCAATAAGCTTACTATACATTTCAGAGTGAATATTTTCGATGGC 297766 Query 32981 CATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33040 |||||||| ||||| ||| ||| |||||| | || || |||||| | | || ||||| Sbjct 297765 AATTTGAAAACCGTAAAAGAATCGAGCCTCAGGAACTTGAACTTCTTTGGAGAAGCGTTC 297706 >seq7056 Length=51435 Score = 86.0 bits (94), Expect = 8e-12 Identities = 192/286 (67%), Gaps = 2/286 (1%) Strand=Plus/Plus Query 63172 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63231 ||| |||| |||||| ||||||| ||| || || | |||| || || || || || || Sbjct 22469 AATGTCAGCATGCCATGGTTCCAGGTAGATTGCGAATGCTCCCGGTCGCTTATTACCGCC 22528 Query 63232 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 63291 || || | || | || ||||| || || |||| | ||| ||||| | |||||||| Sbjct 22529 TTGGTCCACATAACGTGCAGTGTTGTTGTATACTCGAAGCATCGGAATCAAGCCATTGGA 22588 Query 63292 TGTACCATTGGTCCCTGAGATATAGC-TTCCACTGGCACGAATATTACTAATTGATAGAC 63350 ||| ||||| || || | || ||| |||| | || | ||||| | |||| Sbjct 22589 TGTGCCATTTGTTCCCGCAAT-CAGCGATCCAGTAGCTCTGATATTGTGCACGTTCAGAC 22647 Query 63351 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 63410 ||||||| || || | || ||||| | || ||| | || || || || || ||||| Sbjct 22648 CTATTCCACCGGCACTCTTGGAGATCAGGGCACATTGCTTCAAAGTGTCGTAAATGCCAG 22707 Query 63411 CTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTG 63456 | || ||| || |||| | || || ||||| ||||| ||| Sbjct 22708 CAATCGAATCCTCGCTCATTGTTAGGAGGAAACAAGAAGACAGTTG 22753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633529708034000