Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27]
12,915 sequences; 319,757,902 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq899 95.1 2e-14
seq7663 86.0 8e-12
seq7056 86.0 8e-12
>seq899
Length=82215
Score = 95.1 bits (104), Expect = 2e-14
Identities = 187/274 (68%), Gaps = 2/274 (1%)
Strand=Plus/Minus
Query 63172 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63231
||| |||| |||||||||||||| ||| || || | |||| || || || || || ||
Sbjct 23002 AATGTCAGCATGCCACGGTTCCAGGTAGATTGCAAATGCTCCCGGTCGCTTATTACCGCC 22943
Query 63232 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 63291
|| || | ||| | || ||||| || || || | | ||| ||||| | ||||| ||
Sbjct 22942 TTGGTCCACGTAACGTGCAGTGTTGTTGTATACACGAAGCATCGGAATCAAGCCATTAGA 22883
Query 63292 TGTACCATTGGTCCCTGAGAT-ATAGCTTCCACTGGCACGAATATTACTAATTGATAGAC 63350
||| ||||| || || | || | || |||| | || | ||||| | ||||
Sbjct 22882 TGTGCCATTTGTTCCCGCAATCAGAG-ATCCAGTTGCTCTGATATTGTGCACGTTCAGAC 22824
Query 63351 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 63410
||||||| || || | |||||||| | ||| ||| | || || || || ||||||||
Sbjct 22823 CTATTCCACCGGCACTCTTAGAGATCAGTGCACATTGCTTCAAAGTGTCGTAGATGCCAG 22764
Query 63411 CTATACTATCATCCATCATGTTAAGTAGAAAACA 63444
| || ||| || |||| | || || |||||
Sbjct 22763 CAATGGAATCCTCGCTCATTGTCAGAAGGAAACA 22730
Score = 87.8 bits (96), Expect = 2e-12
Identities = 107/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525
|||||||||||| || | || |||||||| || || || || ||| | |||||
Sbjct 22600 AGTTCCCGCATTGAAAAGCGTGGGAGAAGCATGGGTGAAGTATCGCTCACTCATTAGATC 22541
Query 63526 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63585
||||||||| || |||| || || ||| ||||||||| | ||||| ||||| |
Sbjct 22540 GTACGTCTCGATTGCTGCATCAATGTCCTCGCCATGAATTCCAATAGCGACTCGCATAAG 22481
Query 63586 CATGTGCTGAGGTCTTTCAACGATCT 63611
|||||||||||| | |||| ||| ||
Sbjct 22480 CATGTGCTGAGGACGTTCAGCGACCT 22455
>seq7663
Length=436145
Score = 86.0 bits (94), Expect = 8e-12
Identities = 91/120 (76%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 32921 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 32980
|||| | | ||| || ||||| | |||||||||||| || ||||| ||||| |||||
Sbjct 297825 ATCTCTGATATAGGTCTCAATAAGCTTACTATACATTTCAGAGTGAATATTTTCGATGGC 297766
Query 32981 CATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33040
|||||||| ||||| ||| ||| |||||| | || || |||||| | | || |||||
Sbjct 297765 AATTTGAAAACCGTAAAAGAATCGAGCCTCAGGAACTTGAACTTCTTTGGAGAAGCGTTC 297706
>seq7056
Length=51435
Score = 86.0 bits (94), Expect = 8e-12
Identities = 192/286 (67%), Gaps = 2/286 (1%)
Strand=Plus/Plus
Query 63172 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63231
||| |||| |||||| ||||||| ||| || || | |||| || || || || || ||
Sbjct 22469 AATGTCAGCATGCCATGGTTCCAGGTAGATTGCGAATGCTCCCGGTCGCTTATTACCGCC 22528
Query 63232 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 63291
|| || | || | || ||||| || || |||| | ||| ||||| | ||||||||
Sbjct 22529 TTGGTCCACATAACGTGCAGTGTTGTTGTATACTCGAAGCATCGGAATCAAGCCATTGGA 22588
Query 63292 TGTACCATTGGTCCCTGAGATATAGC-TTCCACTGGCACGAATATTACTAATTGATAGAC 63350
||| ||||| || || | || ||| |||| | || | ||||| | ||||
Sbjct 22589 TGTGCCATTTGTTCCCGCAAT-CAGCGATCCAGTAGCTCTGATATTGTGCACGTTCAGAC 22647
Query 63351 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 63410
||||||| || || | || ||||| | || ||| | || || || || || |||||
Sbjct 22648 CTATTCCACCGGCACTCTTGGAGATCAGGGCACATTGCTTCAAAGTGTCGTAAATGCCAG 22707
Query 63411 CTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTG 63456
| || ||| || |||| | || || ||||| ||||| |||
Sbjct 22708 CAATCGAATCCTCGCTCATTGTTAGGAGGAAACAAGAAGACAGTTG 22753
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633529708034000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |