Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq8275 91.5 1e-13 >seq8275 Length=204344 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||||||||| ||||| || || | ||||| | ||||| ||| | || Sbjct 59577 AATGCAAATCTTTGTAAAGACATTGACTGGAAAGACGATCACCCTGGAAGTCGAGGCCTC 59636 Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || ||| |||| || || | ||| || || ||||| |||||||| |||| Sbjct 59637 GGACACAATTGAGAATGTGAAGGCCAAGATTCA-AGATAAGGAAGGCATTCCACCAGACC 59695 Query 25117 AACAGCGGATTATTTTTGCCGG 25138 | ||||| | || |||||||| Sbjct 59696 AGCAGCGACTCATATTTGCCGG 59717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433259793495725