Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27]
12,915 sequences; 319,757,902 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq8832 86.0 5e-12
seq8275 82.4 6e-11
>seq8832
Length=33236
Score = 86.0 bits (94), Expect = 5e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| ||||| || |||||| | || || || || | || |||||||| ||| | |
Sbjct 24617 ATGCAGATTTTCGTCAAAACTCTGACAGGAAAGACTATTACACTTGAAGTCGAAGCTTCT 24558
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | || || | ||| || ||||||||||||||||| ||||| || |||||
Sbjct 24557 GACACCATTGAAAATGTTAAAGCCAAGATTCAAGACAAGGAGGGAATTCCCCCAGATCAG 24498
Query 22339 CAACGTCTTATATTTGCCGG 22358
||||| || || || || ||
Sbjct 24497 CAACGACTGATCTTCGCAGG 24478
>seq8275
Length=204344
Score = 82.4 bits (90), Expect = 6e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| ||||| || || || || || || ||| |||| || ||||| || || |
Sbjct 59578 ATGCAAATCTTTGTAAAGACATTGACTGGAAAGACGATCACCCTGGAAGTCGAGGCCTCG 59637
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | || || | || || |||||||| ||||| || |||||||| || ||
Sbjct 59638 GACACAATTGAGAATGTGAAGGCCAAGATTCAAGATAAGGAAGGCATTCCACCAGACCAG 59697
Query 22339 CAACGTCTTATATTTGCCGG 22358
|| || || |||||||||||
Sbjct 59698 CAGCGACTCATATTTGCCGG 59717
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419661934156975
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |