Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27]
12,915 sequences; 319,757,902 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq9788 102 2e-16
seq12057 100 6e-16
seq11992 100 6e-16
seq11403 100 6e-16
seq11220 100 6e-16
seq11096 100 6e-16
seq10502 100 6e-16
seq8873 100 6e-16
seq2225 100 6e-16
seq5408 98.7 2e-15
seq4018 98.7 2e-15
seq7329 84.2 4e-11
>seq9788
Length=20206
Score = 102 bits (112), Expect = 2e-16
Identities = 68/76 (89%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||||||||||||||||||||||| | ||||||||||||| | |||| |||||||||
Sbjct 13587 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 13646
Query 142563 CCCCACATCGGGCAGA 142578
|||| |||||||| ||
Sbjct 13647 CCCCGCATCGGGCTGA 13662
>seq12057
Length=105320
Score = 100 bits (110), Expect = 6e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||||||||||||||||||||||| | ||||||||||||| | |||| |||||||||
Sbjct 99623 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 99682
Query 142563 CCCCACATCGGGC 142575
|||| ||||||||
Sbjct 99683 CCCCGCATCGGGC 99695
Score = 100 bits (110), Expect = 6e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||||||||||||||||||||||| | ||||||||||||| | |||| |||||||||
Sbjct 99902 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 99961
Query 142563 CCCCACATCGGGC 142575
|||| ||||||||
Sbjct 99962 CCCCGCATCGGGC 99974
Score = 100 bits (110), Expect = 6e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||||||||||||||||||||||| | ||||||||||||| | |||| |||||||||
Sbjct 100075 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 100134
Query 142563 CCCCACATCGGGC 142575
|||| ||||||||
Sbjct 100135 CCCCGCATCGGGC 100147
Score = 95.1 bits (104), Expect = 2e-14
Identities = 63/70 (90%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 142506 CCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCC 142565
||||||||||||||||||||||| | ||||||||||||| | |||| ||||||||||||
Sbjct 100247 CCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGCCC 100306
Query 142566 CACATCGGGC 142575
| ||||||||
Sbjct 100307 CGCATCGGGC 100316
>seq11992
Length=306990
Score = 100 bits (110), Expect = 6e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||||||||||||||||||||||| | ||||||||||||| | |||| |||||||||
Sbjct 298348 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 298289
Query 142563 CCCCACATCGGGC 142575
|||| ||||||||
Sbjct 298288 CCCCGCATCGGGC 298276
>seq11403
Length=120023
Score = 100 bits (110), Expect = 6e-16
Identities = 69/78 (88%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||||||||||||||||||||||| | ||||||||||||| | |||| ||||||||||
Sbjct 39789 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 39730
Query 142564 CCCACATCGGGCAGAAGT 142581
||| |||||||| || ||
Sbjct 39729 CCCGCATCGGGCTGAGGT 39712
>seq11220
Length=321025
Score = 100 bits (110), Expect = 6e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||||||||||||||||||||||| | ||||||||||||| | |||| |||||||||
Sbjct 98506 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 98447
Query 142563 CCCCACATCGGGC 142575
|||| ||||||||
Sbjct 98446 CCCCGCATCGGGC 98434
>seq11096
Length=126596
Score = 100 bits (110), Expect = 6e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||||||||||||||||||||||| | ||||||||||||| | |||| |||||||||
Sbjct 83379 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 83320
Query 142563 CCCCACATCGGGC 142575
|||| ||||||||
Sbjct 83319 CCCCGCATCGGGC 83307
>seq10502
Length=334720
Score = 100 bits (110), Expect = 6e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||||||||||||||||||||||| | ||||||||||||| | |||| |||||||||
Sbjct 129882 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 129823
Query 142563 CCCCACATCGGGC 142575
|||| ||||||||
Sbjct 129822 CCCCGCATCGGGC 129810
>seq8873
Length=735772
Score = 100 bits (110), Expect = 6e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||||||||||||||||||||||| | ||||||||||||| | |||| |||||||||
Sbjct 346168 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 346227
Query 142563 CCCCACATCGGGC 142575
|||| ||||||||
Sbjct 346228 CCCCGCATCGGGC 346240
>seq2225
Length=73257
Score = 100 bits (110), Expect = 6e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||||||||||||||||||||||| | ||||||||||||| | |||| |||||||||
Sbjct 67560 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 67619
Query 142563 CCCCACATCGGGC 142575
|||| ||||||||
Sbjct 67620 CCCCGCATCGGGC 67632
Score = 100 bits (110), Expect = 6e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||||||||||||||||||||||| | ||||||||||||| | |||| |||||||||
Sbjct 67839 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 67898
Query 142563 CCCCACATCGGGC 142575
|||| ||||||||
Sbjct 67899 CCCCGCATCGGGC 67911
Score = 100 bits (110), Expect = 6e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||||||||||||||||||||||| | ||||||||||||| | |||| |||||||||
Sbjct 68012 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 68071
Query 142563 CCCCACATCGGGC 142575
|||| ||||||||
Sbjct 68072 CCCCGCATCGGGC 68084
Score = 95.1 bits (104), Expect = 2e-14
Identities = 63/70 (90%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 142506 CCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCC 142565
||||||||||||||||||||||| | ||||||||||||| | |||| ||||||||||||
Sbjct 68184 CCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGCCC 68243
Query 142566 CACATCGGGC 142575
| ||||||||
Sbjct 68244 CGCATCGGGC 68253
>seq5408
Length=229914
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||||||||||||||||||||||| | ||||||||||||| | |||| ||||||||||
Sbjct 47466 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 47407
Query 142564 CCCACATCGGGC 142575
||| ||||||||
Sbjct 47406 CCCGCATCGGGC 47395
>seq4018
Length=65016
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||||||||||||||||||||||| | ||||||||||||| | |||| ||||||||||
Sbjct 10565 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 10506
Query 142564 CCCACATCGGGC 142575
||| ||||||||
Sbjct 10505 CCCGCATCGGGC 10494
>seq7329
Length=213854
Score = 84.2 bits (92), Expect = 4e-11
Identities = 106/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 217813 GCTGGCACCAAAAACTCTGGTCTCTGCACTCTCATCCTGACAGAGGGAGACTCAGCTGCC 217872
|||||||| | ||||| || ||||| || || || || |||||||| |||||
Sbjct 184739 GCTGGCACTAGGAACTCACAACTGTGCACACTGATTCTCACTGAGGGAGATTCAGCCAAA 184680
Query 217873 ACGCTGGCAACCGCTGGTCTTGCCGTGGTGGGTCGTGAAAGGTATGGTATCTTCCCCCTC 217932
||| |||| |||| |||| ||||| || || || | |||||| | || || |||
Sbjct 184679 ACGTTGGCTGTTTCTGGCCTTGGTGTGGTCGGCCGCGATCGCTATGGTGTATTTCCTCTC 184620
Query 217933 CGTGGTAAGCTGCTCAACGTGCGCGA 217958
||||||||||| ||||| || |||||
Sbjct 184619 CGTGGTAAGCTACTCAATGTTCGCGA 184594
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027666720311515
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |