Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27]
12,915 sequences; 319,757,902 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq8275 82.4 6e-11
>seq8275
Length=204344
Score = 82.4 bits (90), Expect = 6e-11
Identities = 105/145 (72%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 114242 ACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTG 114301
||| || ||||||| ||||| || || || || || ||||||||||| ||||||
Sbjct 60881 ACCGGCAAAGATGAGCCGCTGCTGATCTGGCGGGATTCCTTCTTTGTCCTGAATCTTGGC 60822
Query 114302 TTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAG 114361
||| | | ||||| ||||| | | ||| || |||| || | ||||| || |||||
Sbjct 60821 TTTGACGTTTTCAATTGTGTCCGAAGCTTCCACTTCCAATGTAATAGTTTTTCCAGTCAG 60762
Query 114362 AGTTTTTACAAAAATCTGCATGGCT 114386
|||||| || || || |||||| ||
Sbjct 60761 AGTTTTCACGAAGATTTGCATGCCT 60737
Score = 82.4 bits (90), Expect = 6e-11
Identities = 105/145 (72%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 114242 ACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTG 114301
||| || ||||||| |||||||| || || ||||| ||||||||||| ||||||
Sbjct 61191 ACCGGCAAAGATGAGTCGCTGTTGATCAGGTGGAATTCCTTCTTTGTCCTGAATCTTAGC 61132
Query 114302 TTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAG 114361
||| | | ||| | || |||| | || || |||| || | ||||| || || ||
Sbjct 61131 TTTCACATTTTCGATCGTATCGGATGCCTCCACTTCCAAAGTAATAGTTTTTCCAGTTAG 61072
Query 114362 AGTTTTTACAAAAATCTGCATGGCT 114386
|||||| || || ||||||||| ||
Sbjct 61071 AGTTTTCACGAAGATCTGCATGCCT 61047
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420068270188980
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |