Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27]
12,915 sequences; 319,757,902 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq8832 116 9e-21
seq8587 113 1e-19
seq8716 104 6e-17
seq8275 95.1 3e-14
seq8131 95.1 3e-14
>seq8832
Length=33236
Score = 116 bits (128), Expect = 9e-21
Identities = 113/144 (78%), Gaps = 6/144 (4%)
Strand=Plus/Plus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTC 288390
|| ||||||||||| ||||| || ||||||| |||||||| || |||||||| ||
Sbjct 23876 CCAGCGAAGATCAGTCGCTGCTG---ATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTG 23932
Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450
|| ||||| ||||| |||| ||| | ||| |||||||| ||||| ||||| || ||
Sbjct 23933 GCCTTCACATTTTCAATAGTATCCGAGGCTTCGACTTCGAGGGTGATGGTCTTTCCAGTG 23992
Query 288451 AGAGTCTTGACGAATATCTGCATT 288474
|| ||||| ||||| |||||||||
Sbjct 23993 AGGGTCTTAACGAAGATCTGCATT 24016
Score = 113 bits (124), Expect = 1e-19
Identities = 112/144 (78%), Gaps = 6/144 (4%)
Strand=Plus/Plus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTC 288390
|| || ||||| || ||||| || |||||| |||||||| || |||||||| ||
Sbjct 22394 CCAGCAAAGATGAGTCGCTGCTGG---TCTGGGGGAATTCCTTCCTTGTCCTGGATCTTG 22450
Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450
|| ||||||||||| || | |||| | ||| |||||||| ||||| ||||| || ||
Sbjct 22451 GCCTTCACGTTTTCGATGGTATCGGAAGCTTCGACTTCGAGGGTGATGGTCTTTCCAGTG 22510
Query 288451 AGAGTCTTGACGAATATCTGCATT 288474
|| ||||||||||| |||||||||
Sbjct 22511 AGGGTCTTGACGAAGATCTGCATT 22534
Score = 111 bits (122), Expect = 4e-19
Identities = 109/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393
|| |||||||||| |||||| ||| || || |||||||| |||||||| || ||
Sbjct 22689 CCAGCGAAGATCAAACGCTGCTGATCGGGAGGAATGCCTTCTTTGTCCTGGATCTTGGCC 22748
Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453
||||| ||||| || | |||| | || |||||||| ||||| ||||| || || ||
Sbjct 22749 TTCACATTTTCAATGGTATCGGAAGCCTCAACTTCGAGGGTGATGGTCTTGCCAGTGAGG 22808
Query 288454 GTCTTGACGAATATCTGCATT 288474
||||||||||| |||||||||
Sbjct 22809 GTCTTGACGAAGATCTGCATT 22829
Score = 111 bits (122), Expect = 4e-19
Identities = 109/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393
|| || ||||||| ||||| || ||| |||||||| |||||||| ||||| ||
Sbjct 23287 CCAGCAAAGATCAATCGCTGCTGGTCTGGTGGAATTCCTTCCTTATCCTGAATTTTGGCC 23346
Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453
|| || ||||| || | |||| | ||| |||||||| ||||||||||| || || |||
Sbjct 23347 TTTACATTTTCGATGGTATCGGATGCTTCAACTTCGAGAGTGATCGTCTTTCCAGTAAGA 23406
Query 288454 GTCTTGACGAATATCTGCATT 288474
||||||||||| || ||||||
Sbjct 23407 GTCTTGACGAAGATTTGCATT 23427
Score = 104 bits (114), Expect = 6e-17
Identities = 110/144 (76%), Gaps = 6/144 (4%)
Strand=Plus/Plus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTC 288390
|| |||||||||| || || ||| |||||| |||||||||||||||||||| ||
Sbjct 22986 CCAGCGAAGATCAATCGTTGCTGA---TCTGGGGGAATTCCTTCTTTATCCTGGATCTTG 23042
Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450
|| || |||||||| || | || | ||| ||||| || ||||| ||||| || ||
Sbjct 23043 GCCTTGACGTTTTCGATGGTGTCCGAAGCTTCGACTTCAAGGGTGATTGTCTTTCCAGTG 23102
Query 288451 AGAGTCTTGACGAATATCTGCATT 288474
|| |||||||| || |||||||||
Sbjct 23103 AGGGTCTTGACAAAGATCTGCATT 23126
Score = 95.1 bits (104), Expect = 3e-14
Identities = 108/144 (75%), Gaps = 6/144 (4%)
Strand=Plus/Plus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTC 288390
||||||||||||| ||||| || |||||| || || ||||| ||||| || ||
Sbjct 23583 CCTGCGAAGATCAATCGCTGCTG---GTCTGGGGGAATCCCCTCTTTGTCCTGAATCTTG 23639
Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450
|| || ||||| || || | |||| | || |||||||| ||||| ||||| || ||
Sbjct 23640 GCCTTGACGTTCTCGATGGTATCGGAAGCCTCAACTTCGAGGGTGATGGTCTTGCCAGTG 23699
Query 288451 AGAGTCTTGACGAATATCTGCATT 288474
|| ||||| ||||| |||||||||
Sbjct 23700 AGGGTCTTAACGAAGATCTGCATT 23723
Score = 93.3 bits (102), Expect = 1e-13
Identities = 107/143 (75%), Gaps = 6/143 (4%)
Strand=Plus/Plus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTC 288390
|||||||||||||| || || || ||||||| ||||| || || || || || ||
Sbjct 24478 CCTGCGAAGATCAGTCGTTGCTG---ATCTGGGGGAATTCCCTCCTTGTCTTGAATCTTG 24534
Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450
||||| || ||||| || | || | ||| ||||| || || || ||||| || |||
Sbjct 24535 GCTTTAACATTTTCAATGGTGTCAGAAGCTTCGACTTCAAGTGTAATAGTCTTTCCTGTC 24594
Query 288451 AGAGTCTTGACGAATATCTGCAT 288473
||||| |||||||| ||||||||
Sbjct 24595 AGAGTTTTGACGAAAATCTGCAT 24617
>seq8587
Length=192155
Score = 113 bits (124), Expect = 1e-19
Identities = 112/144 (78%), Gaps = 6/144 (4%)
Strand=Plus/Plus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTC 288390
||||||||||||| || || || ||||||| |||||||||||||||||||| ||
Sbjct 140289 CCTGCGAAGATCAATCGTTGCTG---ATCTGGGGGAATTCCTTCTTTATCCTGGATCTTG 140345
Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450
|| || |||||||| || | || | ||| |||||||| || || ||||| || ||
Sbjct 140346 GCCTTGACGTTTTCAATGGTGTCCGAAGCTTCGACTTCGAGGGTAATTGTCTTTCCAGTG 140405
Query 288451 AGAGTCTTGACGAATATCTGCATT 288474
|| ||||| |||||||||||||||
Sbjct 140406 AGGGTCTTCACGAATATCTGCATT 140429
Score = 105 bits (116), Expect = 2e-17
Identities = 110/143 (77%), Gaps = 6/143 (4%)
Strand=Plus/Plus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTC 288390
|||||||||||||| ||||| || ||||||| ||||| || || || || || ||
Sbjct 141777 CCTGCGAAGATCAGTCGCTGCTG---ATCTGGGGGAATTCCCTCCTTGTCTTGAATCTTG 141833
Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450
||||| || ||||| |||| || | ||| ||||| ||||| || ||||| || |||
Sbjct 141834 GCTTTAACATTTTCAATAGTGTCAGAAGCTTCGACTTCAAGCGTAATAGTCTTTCCTGTC 141893
Query 288451 AGAGTCTTGACGAATATCTGCAT 288473
||||| |||||||| ||||||||
Sbjct 141894 AGAGTTTTGACGAAAATCTGCAT 141916
Score = 104 bits (114), Expect = 6e-17
Identities = 110/144 (76%), Gaps = 6/144 (4%)
Strand=Plus/Plus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTC 288390
|| |||||||||| | ||| ||| |||||| |||||||| || |||||||| ||
Sbjct 141178 CCGGCGAAGATCAATCTCTGCTGA---TCTGGGGGAATTCCTTCCTTGTCCTGGATCTTG 141234
Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450
|| ||||||||||| || | ||| | ||| |||||||| || || ||||| || ||
Sbjct 141235 GCCTTCACGTTTTCAATCGTATCCGAGGCTTCGACTTCGAGAGTAATGGTCTTTCCAGTG 141294
Query 288451 AGAGTCTTGACGAATATCTGCATT 288474
|| |||||||| || |||||||||
Sbjct 141295 AGGGTCTTGACAAAGATCTGCATT 141318
Score = 95.1 bits (104), Expect = 3e-14
Identities = 108/144 (75%), Gaps = 6/144 (4%)
Strand=Plus/Plus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTC 288390
|| || ||||||| ||||| || |||||| |||||||| ||||| || |||||
Sbjct 140587 CCAGCAAAGATCAATCGCTGCTGG---TCTGGGGGAATTCCTTCCTTATCTTGAATTTTG 140643
Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450
|| || || ||||| || | |||| | || |||||||| ||||| ||||| || ||
Sbjct 140644 GCCTTTACATTTTCGATGGTATCGGATGCCTCAACTTCGAGAGTGATTGTCTTTCCAGTA 140703
Query 288451 AGAGTCTTGACGAATATCTGCATT 288474
|| ||||||||||| || ||||||
Sbjct 140704 AGGGTCTTGACGAAGATTTGCATT 140727
Score = 95.1 bits (104), Expect = 3e-14
Identities = 108/144 (75%), Gaps = 6/144 (4%)
Strand=Plus/Plus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTC 288390
||||||||||||| ||||| || |||||| ||||| || || ||||| |||||
Sbjct 140882 CCTGCGAAGATCAATCGCTGCTG---GTCTGGGGGAATTCCCTCCTTGTCCTGAATTTTA 140938
Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450
|| || ||||| || || | ||| | ||| ||||| || || || ||||| || ||
Sbjct 140939 GCCTTGACGTTCTCAATGGTATCCGAAGCTTCGACTTCAAGGGTAATTGTCTTTCCAGTA 140998
Query 288451 AGAGTCTTGACGAATATCTGCATT 288474
|| ||||||||||| |||||||||
Sbjct 140999 AGGGTCTTGACGAAGATCTGCATT 141022
Score = 93.3 bits (102), Expect = 1e-13
Identities = 107/143 (75%), Gaps = 6/143 (4%)
Strand=Plus/Plus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTC 288390
|| || |||||||| ||||| || || ||| |||||||| || || || || ||
Sbjct 139693 CCAGCAAAGATCAGTCGCTGCTGG---TCCGGGGGAATTCCTTCCTTGTCTTGAATCTTG 139749
Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450
||||||||||| || || | ||| | || |||||||| ||||| ||||| || ||
Sbjct 139750 GCTTTCACGTTCTCGATGGTATCAGAAGCCTCAACTTCGAGGGTGATGGTCTTGCCAGTG 139809
Query 288451 AGAGTCTTGACGAATATCTGCAT 288473
|| ||||||||||| ||||||||
Sbjct 139810 AGGGTCTTGACGAAGATCTGCAT 139832
Score = 89.7 bits (98), Expect = 1e-12
Identities = 107/144 (74%), Gaps = 6/144 (4%)
Strand=Plus/Plus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTC 288390
|| || ||||||| || || ||| |||||| || |||||||| |||||||| ||
Sbjct 141470 CCAGCAAAGATCAATCGTTGCTGA---TCTGGGGGAATCCCTTCTTTGTCCTGGATCTTG 141526
Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450
|| || || ||||| || | ||| | ||| ||||| || || || ||||| || ||
Sbjct 141527 GCCTTGACATTTTCAATTGTATCTGAGGCTTCGACTTCAAGAGTAATAGTCTTTCCAGTA 141586
Query 288451 AGAGTCTTGACGAATATCTGCATT 288474
||||||||||| || |||||||||
Sbjct 141587 AGAGTCTTGACAAAGATCTGCATT 141610
>seq8716
Length=186993
Score = 104 bits (114), Expect = 6e-17
Identities = 111/147 (76%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 288329 GTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTT 288388
|||| ||||||||||| || ||||| ||| | ||||||||||| |||||||| || |
Sbjct 74511 GTTTACCTGCGAAGATAAGTCGCTGCTGATCAGGCGGGATTCCTTCCTTATCCTGAATCT 74570
Query 288389 TCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGG 288448
| || ||||| || || || | |||| | || || || || ||||| || || || |
Sbjct 74571 TGGCCTTCACATTCTCGATGGTATCGGAGGCCTCAACCTCCAGGGTGATAGTTTTTCCCG 74630
Query 288449 TCAGAGTCTTGACGAATATCTGCATTA 288475
| |||||||| ||||| || |||||||
Sbjct 74631 TAAGAGTCTTTACGAAGATTTGCATTA 74657
>seq8275
Length=204344
Score = 95.1 bits (104), Expect = 3e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393
|| || ||||| || || || ||| ||| |||||||| ||||| || || || |||
Sbjct 59423 CCGGCAAAGATAAGTCGTTGCTGATCCGGTGGAATTCCTTCCTTATCTTGAATCTTTGCT 59364
Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453
||||| ||||| |||| ||| | ||| || ||||| ||||| ||||||||||| ||
Sbjct 59363 TTCACATTTTCAATAGTGTCGGAGGCTTCAACCTCGAGTGTGATTGTCTTCCCGGTTAGG 59304
Query 288454 GTCTTGACGAATATCTGCAT 288473
|| || || || ||||||||
Sbjct 59303 GTTTTCACAAAGATCTGCAT 59284
Score = 95.1 bits (104), Expect = 3e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393
|| || ||||| || ||||||||| | ||| ||||||||||| ||||| || || |||
Sbjct 61190 CCGGCAAAGATGAGTCGCTGTTGATCAGGTGGAATTCCTTCTTTGTCCTGAATCTTAGCT 61131
Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453
||||| ||||| || | |||| | || ||||| | || || || || || || |||
Sbjct 61130 TTCACATTTTCGATCGTATCGGATGCCTCCACTTCCAAAGTAATAGTTTTTCCAGTTAGA 61071
Query 288454 GTCTTGACGAATATCTGCAT 288473
|| || ||||| ||||||||
Sbjct 61070 GTTTTCACGAAGATCTGCAT 61051
Score = 89.7 bits (98), Expect = 1e-12
Identities = 87/112 (78%), Gaps = 0/112 (0%)
Strand=Plus/Minus
Query 288363 TGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422
|||||||||||| || || ||||| ||||| |||||||| || || | || | ||
Sbjct 60554 TGGGATTCCTTCCTTGTCTTGGATCTTCGCCTTCACGTTCTCGATGGTGTCAGAAGCCTC 60495
Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474
|||||| | ||||| ||||||||||||| ||||| ||||| || ||||||
Sbjct 60494 TACTTCCAAAGTGATTGTCTTCCCGGTCAATGTCTTCACGAAAATTTGCATT 60443
Score = 84.2 bits (92), Expect = 5e-11
Identities = 105/143 (73%), Gaps = 6/143 (4%)
Strand=Plus/Minus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTC 288390
|| || ||||| || ||||| ||| ||||| |||||||||||| ||||| || ||
Sbjct 60880 CCGGCAAAGATGAGCCGCTGCTGA---TCTGGCGGGATTCCTTCTTTGTCCTGAATCTTG 60824
Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450
||||| |||||||| || | || | ||| ||||| | || || || || || |||
Sbjct 60823 GCTTTGACGTTTTCAATTGTGTCCGAAGCTTCCACTTCCAATGTAATAGTTTTTCCAGTC 60764
Query 288451 AGAGTCTTGACGAATATCTGCAT 288473
||||| || ||||| || |||||
Sbjct 60763 AGAGTTTTCACGAAGATTTGCAT 60741
>seq8131
Length=46037
Score = 95.1 bits (104), Expect = 3e-14
Identities = 106/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393
||||||||||| || ||||| ||| | || |||||||| |||||||| || || ||
Sbjct 31587 CCTGCGAAGATAAGTCGCTGCTGATCAGGCGGAATTCCTTCCTTATCCTGAATCTTGGCC 31646
Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453
||||| || || || | ||| | || || ||||| ||||| || || || || |||
Sbjct 31647 TTCACATTCTCGATGGTATCAGAGGCCTCAACCTCGAGGGTGATGGTTTTTCCCGTAAGA 31706
Query 288454 GTCTTGACGAATATCTGCATTA 288475
||||| ||||| || |||||||
Sbjct 31707 GTCTTTACGAAGATTTGCATTA 31728
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179459198531370
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