Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq8832 116 9e-21 seq8587 113 1e-19 seq8716 104 6e-17 seq8275 95.1 3e-14 seq8131 95.1 3e-14 >seq8832 Length=33236 Score = 116 bits (128), Expect = 9e-21 Identities = 113/144 (78%), Gaps = 6/144 (4%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTC 288390 || ||||||||||| ||||| || ||||||| |||||||| || |||||||| || Sbjct 23876 CCAGCGAAGATCAGTCGCTGCTG---ATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTG 23932 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || ||||| ||||| |||| ||| | ||| |||||||| ||||| ||||| || || Sbjct 23933 GCCTTCACATTTTCAATAGTATCCGAGGCTTCGACTTCGAGGGTGATGGTCTTTCCAGTG 23992 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 || ||||| ||||| ||||||||| Sbjct 23993 AGGGTCTTAACGAAGATCTGCATT 24016 Score = 113 bits (124), Expect = 1e-19 Identities = 112/144 (78%), Gaps = 6/144 (4%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTC 288390 || || ||||| || ||||| || |||||| |||||||| || |||||||| || Sbjct 22394 CCAGCAAAGATGAGTCGCTGCTGG---TCTGGGGGAATTCCTTCCTTGTCCTGGATCTTG 22450 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || ||||||||||| || | |||| | ||| |||||||| ||||| ||||| || || Sbjct 22451 GCCTTCACGTTTTCGATGGTATCGGAAGCTTCGACTTCGAGGGTGATGGTCTTTCCAGTG 22510 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 || ||||||||||| ||||||||| Sbjct 22511 AGGGTCTTGACGAAGATCTGCATT 22534 Score = 111 bits (122), Expect = 4e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || |||||||||| |||||| ||| || || |||||||| |||||||| || || Sbjct 22689 CCAGCGAAGATCAAACGCTGCTGATCGGGAGGAATGCCTTCTTTGTCCTGGATCTTGGCC 22748 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 ||||| ||||| || | |||| | || |||||||| ||||| ||||| || || || Sbjct 22749 TTCACATTTTCAATGGTATCGGAAGCCTCAACTTCGAGGGTGATGGTCTTGCCAGTGAGG 22808 Query 288454 GTCTTGACGAATATCTGCATT 288474 ||||||||||| ||||||||| Sbjct 22809 GTCTTGACGAAGATCTGCATT 22829 Score = 111 bits (122), Expect = 4e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || ||||||| ||||| || ||| |||||||| |||||||| ||||| || Sbjct 23287 CCAGCAAAGATCAATCGCTGCTGGTCTGGTGGAATTCCTTCCTTATCCTGAATTTTGGCC 23346 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || || ||||| || | |||| | ||| |||||||| ||||||||||| || || ||| Sbjct 23347 TTTACATTTTCGATGGTATCGGATGCTTCAACTTCGAGAGTGATCGTCTTTCCAGTAAGA 23406 Query 288454 GTCTTGACGAATATCTGCATT 288474 ||||||||||| || |||||| Sbjct 23407 GTCTTGACGAAGATTTGCATT 23427 Score = 104 bits (114), Expect = 6e-17 Identities = 110/144 (76%), Gaps = 6/144 (4%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTC 288390 || |||||||||| || || ||| |||||| |||||||||||||||||||| || Sbjct 22986 CCAGCGAAGATCAATCGTTGCTGA---TCTGGGGGAATTCCTTCTTTATCCTGGATCTTG 23042 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || || |||||||| || | || | ||| ||||| || ||||| ||||| || || Sbjct 23043 GCCTTGACGTTTTCGATGGTGTCCGAAGCTTCGACTTCAAGGGTGATTGTCTTTCCAGTG 23102 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 || |||||||| || ||||||||| Sbjct 23103 AGGGTCTTGACAAAGATCTGCATT 23126 Score = 95.1 bits (104), Expect = 3e-14 Identities = 108/144 (75%), Gaps = 6/144 (4%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTC 288390 ||||||||||||| ||||| || |||||| || || ||||| ||||| || || Sbjct 23583 CCTGCGAAGATCAATCGCTGCTG---GTCTGGGGGAATCCCCTCTTTGTCCTGAATCTTG 23639 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || || ||||| || || | |||| | || |||||||| ||||| ||||| || || Sbjct 23640 GCCTTGACGTTCTCGATGGTATCGGAAGCCTCAACTTCGAGGGTGATGGTCTTGCCAGTG 23699 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 || ||||| ||||| ||||||||| Sbjct 23700 AGGGTCTTAACGAAGATCTGCATT 23723 Score = 93.3 bits (102), Expect = 1e-13 Identities = 107/143 (75%), Gaps = 6/143 (4%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTC 288390 |||||||||||||| || || || ||||||| ||||| || || || || || || Sbjct 24478 CCTGCGAAGATCAGTCGTTGCTG---ATCTGGGGGAATTCCCTCCTTGTCTTGAATCTTG 24534 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 ||||| || ||||| || | || | ||| ||||| || || || ||||| || ||| Sbjct 24535 GCTTTAACATTTTCAATGGTGTCAGAAGCTTCGACTTCAAGTGTAATAGTCTTTCCTGTC 24594 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 ||||| |||||||| |||||||| Sbjct 24595 AGAGTTTTGACGAAAATCTGCAT 24617 >seq8587 Length=192155 Score = 113 bits (124), Expect = 1e-19 Identities = 112/144 (78%), Gaps = 6/144 (4%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTC 288390 ||||||||||||| || || || ||||||| |||||||||||||||||||| || Sbjct 140289 CCTGCGAAGATCAATCGTTGCTG---ATCTGGGGGAATTCCTTCTTTATCCTGGATCTTG 140345 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || || |||||||| || | || | ||| |||||||| || || ||||| || || Sbjct 140346 GCCTTGACGTTTTCAATGGTGTCCGAAGCTTCGACTTCGAGGGTAATTGTCTTTCCAGTG 140405 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 || ||||| ||||||||||||||| Sbjct 140406 AGGGTCTTCACGAATATCTGCATT 140429 Score = 105 bits (116), Expect = 2e-17 Identities = 110/143 (77%), Gaps = 6/143 (4%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTC 288390 |||||||||||||| ||||| || ||||||| ||||| || || || || || || Sbjct 141777 CCTGCGAAGATCAGTCGCTGCTG---ATCTGGGGGAATTCCCTCCTTGTCTTGAATCTTG 141833 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 ||||| || ||||| |||| || | ||| ||||| ||||| || ||||| || ||| Sbjct 141834 GCTTTAACATTTTCAATAGTGTCAGAAGCTTCGACTTCAAGCGTAATAGTCTTTCCTGTC 141893 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 ||||| |||||||| |||||||| Sbjct 141894 AGAGTTTTGACGAAAATCTGCAT 141916 Score = 104 bits (114), Expect = 6e-17 Identities = 110/144 (76%), Gaps = 6/144 (4%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTC 288390 || |||||||||| | ||| ||| |||||| |||||||| || |||||||| || Sbjct 141178 CCGGCGAAGATCAATCTCTGCTGA---TCTGGGGGAATTCCTTCCTTGTCCTGGATCTTG 141234 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || ||||||||||| || | ||| | ||| |||||||| || || ||||| || || Sbjct 141235 GCCTTCACGTTTTCAATCGTATCCGAGGCTTCGACTTCGAGAGTAATGGTCTTTCCAGTG 141294 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 || |||||||| || ||||||||| Sbjct 141295 AGGGTCTTGACAAAGATCTGCATT 141318 Score = 95.1 bits (104), Expect = 3e-14 Identities = 108/144 (75%), Gaps = 6/144 (4%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTC 288390 || || ||||||| ||||| || |||||| |||||||| ||||| || ||||| Sbjct 140587 CCAGCAAAGATCAATCGCTGCTGG---TCTGGGGGAATTCCTTCCTTATCTTGAATTTTG 140643 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || || || ||||| || | |||| | || |||||||| ||||| ||||| || || Sbjct 140644 GCCTTTACATTTTCGATGGTATCGGATGCCTCAACTTCGAGAGTGATTGTCTTTCCAGTA 140703 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 || ||||||||||| || |||||| Sbjct 140704 AGGGTCTTGACGAAGATTTGCATT 140727 Score = 95.1 bits (104), Expect = 3e-14 Identities = 108/144 (75%), Gaps = 6/144 (4%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTC 288390 ||||||||||||| ||||| || |||||| ||||| || || ||||| ||||| Sbjct 140882 CCTGCGAAGATCAATCGCTGCTG---GTCTGGGGGAATTCCCTCCTTGTCCTGAATTTTA 140938 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || || ||||| || || | ||| | ||| ||||| || || || ||||| || || Sbjct 140939 GCCTTGACGTTCTCAATGGTATCCGAAGCTTCGACTTCAAGGGTAATTGTCTTTCCAGTA 140998 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 || ||||||||||| ||||||||| Sbjct 140999 AGGGTCTTGACGAAGATCTGCATT 141022 Score = 93.3 bits (102), Expect = 1e-13 Identities = 107/143 (75%), Gaps = 6/143 (4%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTC 288390 || || |||||||| ||||| || || ||| |||||||| || || || || || Sbjct 139693 CCAGCAAAGATCAGTCGCTGCTGG---TCCGGGGGAATTCCTTCCTTGTCTTGAATCTTG 139749 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 ||||||||||| || || | ||| | || |||||||| ||||| ||||| || || Sbjct 139750 GCTTTCACGTTCTCGATGGTATCAGAAGCCTCAACTTCGAGGGTGATGGTCTTGCCAGTG 139809 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 || ||||||||||| |||||||| Sbjct 139810 AGGGTCTTGACGAAGATCTGCAT 139832 Score = 89.7 bits (98), Expect = 1e-12 Identities = 107/144 (74%), Gaps = 6/144 (4%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTC 288390 || || ||||||| || || ||| |||||| || |||||||| |||||||| || Sbjct 141470 CCAGCAAAGATCAATCGTTGCTGA---TCTGGGGGAATCCCTTCTTTGTCCTGGATCTTG 141526 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || || || ||||| || | ||| | ||| ||||| || || || ||||| || || Sbjct 141527 GCCTTGACATTTTCAATTGTATCTGAGGCTTCGACTTCAAGAGTAATAGTCTTTCCAGTA 141586 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 ||||||||||| || ||||||||| Sbjct 141587 AGAGTCTTGACAAAGATCTGCATT 141610 >seq8716 Length=186993 Score = 104 bits (114), Expect = 6e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 288329 GTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTT 288388 |||| ||||||||||| || ||||| ||| | ||||||||||| |||||||| || | Sbjct 74511 GTTTACCTGCGAAGATAAGTCGCTGCTGATCAGGCGGGATTCCTTCCTTATCCTGAATCT 74570 Query 288389 TCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGG 288448 | || ||||| || || || | |||| | || || || || ||||| || || || | Sbjct 74571 TGGCCTTCACATTCTCGATGGTATCGGAGGCCTCAACCTCCAGGGTGATAGTTTTTCCCG 74630 Query 288449 TCAGAGTCTTGACGAATATCTGCATTA 288475 | |||||||| ||||| || ||||||| Sbjct 74631 TAAGAGTCTTTACGAAGATTTGCATTA 74657 >seq8275 Length=204344 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || ||||| || || || ||| ||| |||||||| ||||| || || || ||| Sbjct 59423 CCGGCAAAGATAAGTCGTTGCTGATCCGGTGGAATTCCTTCCTTATCTTGAATCTTTGCT 59364 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 ||||| ||||| |||| ||| | ||| || ||||| ||||| ||||||||||| || Sbjct 59363 TTCACATTTTCAATAGTGTCGGAGGCTTCAACCTCGAGTGTGATTGTCTTCCCGGTTAGG 59304 Query 288454 GTCTTGACGAATATCTGCAT 288473 || || || || |||||||| Sbjct 59303 GTTTTCACAAAGATCTGCAT 59284 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || ||||| || ||||||||| | ||| ||||||||||| ||||| || || ||| Sbjct 61190 CCGGCAAAGATGAGTCGCTGTTGATCAGGTGGAATTCCTTCTTTGTCCTGAATCTTAGCT 61131 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 ||||| ||||| || | |||| | || ||||| | || || || || || || ||| Sbjct 61130 TTCACATTTTCGATCGTATCGGATGCCTCCACTTCCAAAGTAATAGTTTTTCCAGTTAGA 61071 Query 288454 GTCTTGACGAATATCTGCAT 288473 || || ||||| |||||||| Sbjct 61070 GTTTTCACGAAGATCTGCAT 61051 Score = 89.7 bits (98), Expect = 1e-12 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 288363 TGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 |||||||||||| || || ||||| ||||| |||||||| || || | || | || Sbjct 60554 TGGGATTCCTTCCTTGTCTTGGATCTTCGCCTTCACGTTCTCGATGGTGTCAGAAGCCTC 60495 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 |||||| | ||||| ||||||||||||| ||||| ||||| || |||||| Sbjct 60494 TACTTCCAAAGTGATTGTCTTCCCGGTCAATGTCTTCACGAAAATTTGCATT 60443 Score = 84.2 bits (92), Expect = 5e-11 Identities = 105/143 (73%), Gaps = 6/143 (4%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTC 288390 || || ||||| || ||||| ||| ||||| |||||||||||| ||||| || || Sbjct 60880 CCGGCAAAGATGAGCCGCTGCTGA---TCTGGCGGGATTCCTTCTTTGTCCTGAATCTTG 60824 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 ||||| |||||||| || | || | ||| ||||| | || || || || || ||| Sbjct 60823 GCTTTGACGTTTTCAATTGTGTCCGAAGCTTCCACTTCCAATGTAATAGTTTTTCCAGTC 60764 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 ||||| || ||||| || ||||| Sbjct 60763 AGAGTTTTCACGAAGATTTGCAT 60741 >seq8131 Length=46037 Score = 95.1 bits (104), Expect = 3e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 ||||||||||| || ||||| ||| | || |||||||| |||||||| || || || Sbjct 31587 CCTGCGAAGATAAGTCGCTGCTGATCAGGCGGAATTCCTTCCTTATCCTGAATCTTGGCC 31646 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 ||||| || || || | ||| | || || ||||| ||||| || || || || ||| Sbjct 31647 TTCACATTCTCGATGGTATCAGAGGCCTCAACCTCGAGGGTGATGGTTTTTCCCGTAAGA 31706 Query 288454 GTCTTGACGAATATCTGCATTA 288475 ||||| ||||| || ||||||| Sbjct 31707 GTCTTTACGAAGATTTGCATTA 31728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179459198531370