Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq8275 93.3 4e-14 >seq8275 Length=204344 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363 |||||| | ||||| ||||||||||| || ||||| ||||| || ||||| || || | Sbjct 59717 CCGGCAAATATGAGTCGCTGCTGGTCTGGTGGAATGCCTTCCTTATCTTGAATCTTGGCC 59658 Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423 || ||| ||| | ||| || ||| || ||||| | || | ||||| || ||||| Sbjct 59657 TTCACATTCTCAATTGTGTCCGAGGCCTCGACTTCCAGGGTGATCGTCTTTCCAGTCAAT 59598 Query 64424 GTTTTTACGAAAATTTGCATT 64444 || ||||| || ||||||||| Sbjct 59597 GTCTTTACAAAGATTTGCATT 59577 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || || ||| ||||||||| |||||||| || || |||||||| || ||||| || || Sbjct 60586 TTACCTGCAAAAATGAGCCTTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATCTTC 60527 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| || ||| | || ||| || || ||||| | ||| | ||||| |||||| Sbjct 60526 GCCTTCACGTTCTCGATGGTGTCAGAAGCCTCTACTTCCAAAGTGATTGTCTTCCCGGTC 60467 Query 64421 AAAGTTTTTACGAAAATTTGCATT 64444 || || || ||||||||||||||| Sbjct 60466 AATGTCTTCACGAAAATTTGCATT 60443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499564138592600